# HG changeset patch
# User brigidar
# Date 1451325083 18000
# Node ID 8220dba15923e7bfa89932c187cb9e739b53fb79
# Parent  c5195904b225f73f43419513d93fd2d573f4b3e1
drop of first row removed

diff -r c5195904b225 -r 8220dba15923 snp_to_bed.xml
--- a/snp_to_bed.xml	Mon Nov 09 14:56:21 2015 -0500
+++ b/snp_to_bed.xml	Mon Dec 28 12:51:23 2015 -0500
@@ -1,7 +1,7 @@
 <tool id="snp_to_bed" name="snp location to bed format" version="0.3">
     <description>convert SNP to interval</description>
     <command>
-        cat $input1 | sed '1d'| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1  </command>
+        cat $input1| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1  </command>
     <inputs>
         <param name="input1" type="data" label="input file"/>
     </inputs>