comparison vcf_to_snp.xml @ 9:a9433c403e28 draft default tip

anaconda as default python

8:e9dcf64ef8ec

<tool id="vcf_snp" name="vcf to snp" version="0.5">
    <description>vcf to snp for fasta</description>
    <requirements>
       <!-- Should just use the filter snp that's installed in the path -->
           
       </requirements>

## The command is a Cheetah template which allows some Python based syntax.
## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
## ! We only have a simple single command here.
    <command interpreter="python">
        vcf_snp.py
        -s ${vcf}
        -p ${pos}
        -o output.txt;
        echo ${vcf.name} > name.txt;

9:a9433c403e28

<tool id="vcf_snp" name="vcf to snp" version="0.6">
    <description>vcf to snp for fasta</description>
    <requirements>
       <!-- Should just use the filter snp that's installed in the path -->
           
       </requirements>

## The command is a Cheetah template which allows some Python based syntax.
## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
## ! We only have a simple single command here.
    <command interpreter="/usr/local/anaconda/bin/python">
        vcf_snp.py
        -s ${vcf}
        -p ${pos}
        -o output.txt;
        echo ${vcf.name} > name.txt;