Mercurial > repos > brinkmanlab > awkscript

diff awkscript.xml @ 2:c6c81e6e1ca1 draft

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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/awkscript commit 5c1b5fac50eb1e77d59c2df576e9b54b1b0a1b44"
author brinkmanlab
date Wed, 08 Jul 2020 17:54:33 -0400
parents 87c5033654a6
children ceac6ffb3865
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line diff
--- a/awkscript.xml	Wed Jul 08 17:45:39 2020 -0400
+++ b/awkscript.xml	Wed Jul 08 17:54:33 2020 -0400
@@ -15,11 +15,11 @@
     <version_command>awk --version | head -n 1</version_command>
     <command><![CDATA[
         #set $tool_input = 0
-        env -i PATH=$PATH
+        env -i
         #for env in $envs
             '$env.name'='$env.val'
         #end for
-        awk
+        $(which awk)
             --sandbox
             -v FS='	'
             -v OFS='	'