Mercurial > repos > brinkmanlab > base64
annotate base64.xml @ 0:69ece7949d76 draft default tip
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
author | brinkmanlab |
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date | Tue, 04 Feb 2020 12:54:36 -0500 |
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69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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1 <tool id="base64" name="Coreutils base64 encode/decode" version="1.0" profile="16.04"> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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2 <description>Base64 encode/decode data</description> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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3 <edam_topics> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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4 <edam_topic>topic_3315</edam_topic> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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5 </edam_topics> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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6 <edam_operations> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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7 <edam_operation>operation_3434</edam_operation> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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8 </edam_operations> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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9 <requirements> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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10 <requirement type="package">coreutils</requirement> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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11 </requirements> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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12 <version_command><![CDATA[ base64 --version | head -n1 | sed -r 's/.* ([^ ]+)$/\1/' ]]></version_command> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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13 <command detect_errors="aggressive"><![CDATA[ |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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14 base64 $mode_select.mode |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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15 #if $mode_select.mode == '' |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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16 --wrap=$mode_select.wrap |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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17 #else |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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18 $mode_select.ignore |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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19 #end if |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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20 '$input' |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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21 ]]></command> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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22 <inputs> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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23 <param name="input" type="data" format="data" label="Input" /> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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24 <conditional name="mode_select"> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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25 <param name="mode" type="select" label="Mode" help="Change the mode of operation, from the default of encoding data, to decoding data. Input is expected to be base64 encoded data, and the output will be the original data."> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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26 <option value="" selected="true">Encode</option> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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27 <option value="--decode">Decode</option> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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28 </param> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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29 <when value=""> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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30 <param name="wrap" type="integer" minvalue="0" value="76" label="Line wrap" help="During encoding, wrap lines after cols characters. Use the value 0 to disable line wrapping altogether." /> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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31 </when> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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32 <when value="--decode"> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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33 <param name="ignore" type="boolean" truevalue="--ignore-garbage" falsevalue="" checked="true" label="Ignore unrecognized bytes" help="When decoding, newlines are always accepted. During decoding, ignore unrecognized bytes, to permit distorted data to be decoded."/> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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34 </when> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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35 </conditional> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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36 </inputs> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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37 <outputs> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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38 <data name="output" format="txt"> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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39 <change_format> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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40 <when input="mode_select|mode" value="" format="txt" /> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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41 <when input="mode_select|mode" value="--decode" format="data" /> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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42 </change_format> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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43 </data> |
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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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44 </outputs> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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45 <tests> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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46 <test expect_num_outputs="1"> |
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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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47 <param name="input" value="test-data/test.txt" ftype="data" /> |
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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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48 <output name="output" ftype="txt" > |
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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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49 <assert_contents> |
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50 <has_text text="c29tZSB0ZXN0IGRhdGEK" /> |
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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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51 </assert_contents> |
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52 </output> |
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53 </test> |
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54 <test expect_num_outputs="1"> |
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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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55 <param name="input" value="test-data/test.b64" ftype="txt" /> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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56 <conditional name="mode_select"> |
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57 <param name="mode" value="--decode" /> |
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58 </conditional> |
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59 <output name="output" ftype="data" > |
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60 <assert_contents> |
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61 <has_text text="some test data" /> |
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62 </assert_contents> |
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63 </output> |
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64 </test> |
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65 </tests> |
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66 <help><![CDATA[ |
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67 GNU coreutils online help: <http://www.gnu.org/software/coreutils/> |
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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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68 |
69ece7949d76
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69 base64 transforms data into (or from) base64 encoded form. The base64 encoded form uses printable ASCII characters to represent binary data. |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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70 |
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71 The base64 encoding expands data to roughly 133% of the original. The format conforms to RFC 4648. |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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72 ]]></help> |
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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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73 <citations> |
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74 <citation type="doi">10.5281/zenodo.3364789</citation> |
69ece7949d76
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
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75 </citations> |
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76 </tool> |