Mercurial > repos > brinkmanlab > base64
changeset 0:69ece7949d76 draft default tip
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/base64 commit edc3dbc000afb94a9b52ca662e6153b63638b618"
| author | brinkmanlab |
|---|---|
| date | Tue, 04 Feb 2020 12:54:36 -0500 |
| parents | |
| children | |
| files | base64.xml test-data/test.b64 test-data/test.txt |
| diffstat | 3 files changed, 78 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/base64.xml Tue Feb 04 12:54:36 2020 -0500 @@ -0,0 +1,76 @@ +<tool id="base64" name="Coreutils base64 encode/decode" version="1.0" profile="16.04"> + <description>Base64 encode/decode data</description> + <edam_topics> + <edam_topic>topic_3315</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_3434</edam_operation> + </edam_operations> + <requirements> + <requirement type="package">coreutils</requirement> + </requirements> + <version_command><![CDATA[ base64 --version | head -n1 | sed -r 's/.* ([^ ]+)$/\1/' ]]></version_command> + <command detect_errors="aggressive"><![CDATA[ + base64 $mode_select.mode + #if $mode_select.mode == '' + --wrap=$mode_select.wrap + #else + $mode_select.ignore + #end if + '$input' + ]]></command> + <inputs> + <param name="input" type="data" format="data" label="Input" /> + <conditional name="mode_select"> + <param name="mode" type="select" label="Mode" help="Change the mode of operation, from the default of encoding data, to decoding data. Input is expected to be base64 encoded data, and the output will be the original data."> + <option value="" selected="true">Encode</option> + <option value="--decode">Decode</option> + </param> + <when value=""> + <param name="wrap" type="integer" minvalue="0" value="76" label="Line wrap" help="During encoding, wrap lines after cols characters. Use the value 0 to disable line wrapping altogether." /> + </when> + <when value="--decode"> + <param name="ignore" type="boolean" truevalue="--ignore-garbage" falsevalue="" checked="true" label="Ignore unrecognized bytes" help="When decoding, newlines are always accepted. During decoding, ignore unrecognized bytes, to permit distorted data to be decoded."/> + </when> + </conditional> + </inputs> + <outputs> + <data name="output" format="txt"> + <change_format> + <when input="mode_select|mode" value="" format="txt" /> + <when input="mode_select|mode" value="--decode" format="data" /> + </change_format> + </data> + </outputs> + <tests> + <test expect_num_outputs="1"> + <param name="input" value="test-data/test.txt" ftype="data" /> + <output name="output" ftype="txt" > + <assert_contents> + <has_text text="c29tZSB0ZXN0IGRhdGEK" /> + </assert_contents> + </output> + </test> + <test expect_num_outputs="1"> + <param name="input" value="test-data/test.b64" ftype="txt" /> + <conditional name="mode_select"> + <param name="mode" value="--decode" /> + </conditional> + <output name="output" ftype="data" > + <assert_contents> + <has_text text="some test data" /> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[ + GNU coreutils online help: <http://www.gnu.org/software/coreutils/> + + base64 transforms data into (or from) base64 encoded form. The base64 encoded form uses printable ASCII characters to represent binary data. + + The base64 encoding expands data to roughly 133% of the original. The format conforms to RFC 4648. + ]]></help> + <citations> + <citation type="doi">10.5281/zenodo.3364789</citation> + </citations> +</tool>