Mercurial > repos > brinkmanlab > cheetah
changeset 0:a3bb4353fb00 draft default tip
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/cheetah commit e773feeb6feb9d533eef40ae5cead068e46f596e"
| author | brinkmanlab |
|---|---|
| date | Tue, 28 Jan 2020 15:33:51 -0500 |
| parents | |
| children | |
| files | cheetah.xml |
| diffstat | 1 files changed, 47 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cheetah.xml Tue Jan 28 15:33:51 2020 -0500 @@ -0,0 +1,47 @@ +<tool id="cheetah" name="Cheetah" version="1.0" profile="16.04"> + <description>Generate reports using Galaxies built in Cheetah template engine and include information about datasets</description> + <command><![CDATA[ + mv $body $outfile + ]]></command> + <configfiles> + <configfile name="body"><![CDATA[ + #set $template_path = '/'.join([$__tool_data_path__, "cheetah", $template]) + #import os + #if '..' not in $template and $os.path.isfile($template_path) + #include $template_path + #else + <html> + <body> + $data.name is now complete. + #if $hasattr(__app__.config, "public_url") + You can view it <a href="${__app__.config.public_url}/datasets/${data.dataset.id}/display">here</a>. + #end if + </body> + </html> + #end if + ]]></configfile> + </configfiles> + <inputs> + <param name="data" type="data" format="data" multiple="true" label="Data" /> + <repeat name="extras" title="Extras"> + <param name="extra" type="text" label="Extra data to make available in the template body" /> + </repeat> + <param name="template" type="text" value="template.html" label="Template" help="Relative path of template to use in tool-data/cheetah/" /> + </inputs> + <outputs> + <data name="outfile" format="txt" /> + </outputs> + <help><![CDATA[ + Generate reports using Galaxies built in Cheetah template engine and include information about datasets + + Templates are parsed using Galaxies Cheeta Template Engine. The variables available are everything that is available to a tool including: + - $data Dataset instance passed to the tool input + - $extras[].extra List of extras specified in the tool parameters + - $template Relative path to the current template + + See this tools xml for an example template. + ]]></help> + <citations> + <citation type="doi">10.5281/zenodo.3364789</citation> + </citations> +</tool>