annotate mcm_final.sh @ 7:4c4838703fa8 draft default tip

planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit d396bc9f82b351c35ae4940ebfbb6a43e6e7215a
author brinkmanlab
date Thu, 25 Aug 2022 21:03:33 +0000
parents c14690ec0c9f
children
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c14690ec0c9f "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
brinkmanlab
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1 #!/usr/bin/env bash
c14690ec0c9f "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
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2 ln -sf output/`ls -1 output | tail -n1` final
c14690ec0c9f "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
brinkmanlab
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3 mv "`ls -1 final/*.backbone | tail -n1`" final.backbone
c14690ec0c9f "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
brinkmanlab
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4 mv "`ls -1 final/*_contigs.tab | tail -n1`" final.contigs.tab
c14690ec0c9f "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
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5 mv "`ls -1 final/*.fas | tail -n1`" final.reordered
c14690ec0c9f "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
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c14690ec0c9f "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
brinkmanlab
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7 FEATURES="`ls -1 final/*_features.tab 2>/dev/null | tail -n1`"
c14690ec0c9f "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
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8 if [[ -w ${FEATURES} ]]; then
c14690ec0c9f "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
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9 mv "${FEATURES}" final.features.tab
c14690ec0c9f "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
brinkmanlab
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10 fi
c14690ec0c9f "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
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