Mercurial > repos > brinkmanlab > mauve_contig_mover
comparison mauve_contig_mover.xml @ 6:4931255f2fcc draft
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 25b7aeca541e258a2bff5d0e34e9298996b4a47b"
author | brinkmanlab |
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date | Fri, 20 Nov 2020 18:58:52 +0000 |
parents | f8b09693c9c1 |
children | 4c4838703fa8 |
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5:f8b09693c9c1 | 6:4931255f2fcc |
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42 #set $draft_path = $os.path.basename(str($draft)) + ".gbk" | 42 #set $draft_path = $os.path.basename(str($draft)) + ".gbk" |
43 #else | 43 #else |
44 #set $draft_path = str($draft) | 44 #set $draft_path = str($draft) |
45 #end if | 45 #end if |
46 | 46 |
47 MauveCM -output output -ref $ref -draft $draft_path && $__tool_directory__/mcm_final.sh | 47 test -r $ref && MauveCM -output output -ref $ref -draft $draft_path && $__tool_directory__/mcm_final.sh |
48 ]]></command> | 48 ]]></command> |
49 <inputs> | 49 <inputs> |
50 <param name="draft" type="data" format="genbank,fasta" label="Draft" /> | 50 <param name="draft" type="data" format="genbank,fasta" label="Draft" /> |
51 <conditional name="ref_select"> | 51 <conditional name="ref_select"> |
52 <param name="ref_source" type="select" label="Select the source of the reference to align the draft to"> | 52 <param name="ref_source" type="select" label="Select the source of the reference to align the draft to"> |