Mercurial > repos > brinkmanlab > mauve_contig_mover

changeset 7:4c4838703fa8 draft default tip

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planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit d396bc9f82b351c35ae4940ebfbb6a43e6e7215a
author brinkmanlab
date Thu, 25 Aug 2022 21:03:33 +0000
parents 4931255f2fcc
children
files mauve_contig_mover.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/mauve_contig_mover.xml	Fri Nov 20 18:58:52 2020 +0000
+++ b/mauve_contig_mover.xml	Thu Aug 25 21:03:33 2022 +0000
@@ -11,7 +11,7 @@
     <requirements>
         <requirement type="package" version="2.4.0.snapshot_2015_02_13">mauve</requirement>
     </requirements>
-    <version_command>mauveAligner --version</version_command>
+    <version_command>progressiveMauve --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
         #if $ref_select.ref_source == "db"
             #set global $index = $ref_select.ref_db
@@ -44,7 +44,7 @@
             #set $draft_path = str($draft)
         #end if
         
-        test -r $ref && MauveCM -output output -ref $ref -draft $draft_path && $__tool_directory__/mcm_final.sh
+        test -r $ref && MauveCM -output output -ref $ref -draft $draft_path && $__tool_directory__/mcm_final.sh || ( echo 'Invalid path ' $ref; exit 1 )
     ]]></command>
     <inputs>
         <param name="draft" type="data" format="genbank,fasta" label="Draft" />