Mercurial > repos > brinkmanlab > mauve_contig_mover
changeset 4:71831ead9e16 draft
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit f3a482a9df3fd689699752cdd0751e83670e3b64"
author | brinkmanlab |
---|---|
date | Tue, 23 Jun 2020 15:54:29 -0400 |
parents | 38fbb67f0dac |
children | f8b09693c9c1 |
files | stitch.py |
diffstat | 1 files changed, 0 insertions(+), 5 deletions(-) [+] |
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--- a/stitch.py Tue Jun 16 13:30:24 2020 -0400 +++ b/stitch.py Tue Jun 23 15:54:29 2020 -0400 @@ -128,10 +128,5 @@ result.id = seqid result.description = "" - seqlenlen = len(str(len(result))) - if len(result.id) + 1 + seqlenlen > 28: - # Genbank has a max length for the id and sequence length number, truncate the sequence id ov too long - result.id = result.id[:27 - seqlenlen] - result.seq.alphabet = Alphabet.generic_dna # TODO Investigate why this is required for some datasets SeqIO.write(result, sys.stdout, draft_format)