comparison all_fasta.xml @ 10:2f6ef3a184df draft default tip

"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/microbedb commit 12aaf041d3d5a052c6a3f3aa7f3177591e3b19bf"

9:b08b09342b92

                ,'__dbkeys__', json_group_array(json_object('value', dbkey, 'name', label, 'len_path', ''))
            #end if
            )) FROM (
             SELECT (r.rep_accnum || '.' || r.rep_version) AS unique_build_id,
                    (r.rep_accnum || '_' || r.rep_version) AS dbkey,
                    (REPLACE(r.definition, ', complete genome.', '') || ' [' || r.rep_accnum || '.' || r.rep_version || ']') AS label,
                    ('${os.path.dirname(str($db))}/' || genomeproject.gpv_directory || '/' || genomeproject.filename || '_genomic.fna') AS file_path
             FROM genomeproject JOIN replicon r ON genomeproject.gpv_id = r.gpv_id AND r.rep_type = 'chromosome'
             WHERE genomeproject.file_types IS NOT NULL
               AND genomeproject.file_types LIKE '%.fna%'
               AND r.rep_type = 'chromosome'
            )
        ]]></configfile>
    </configfiles>
    <inputs>

10:2f6ef3a184df

                ,'__dbkeys__', json_group_array(json_object('value', dbkey, 'name', label, 'len_path', ''))
            #end if
            )) FROM (
             SELECT (r.rep_accnum || '.' || r.rep_version) AS unique_build_id,
                    (r.rep_accnum || '_' || r.rep_version) AS dbkey,
                    (REPLACE(REPLACE(r.definition, ', complete sequence.', ''), ', complete genome.', '') || ' [' || r.rep_accnum || '.' || r.rep_version || ']') AS label,
                    ('${os.path.dirname(str($db))}/' || genomeproject.gpv_directory || '/' || r.file_name || '.fna') AS file_path
             FROM genomeproject JOIN replicon r ON genomeproject.gpv_id = r.gpv_id AND r.rep_type = 'chromosome'
             WHERE r.file_types IS NOT NULL
               AND r.file_types LIKE '%.fna%'
               AND r.rep_type = 'chromosome'
            )
        ]]></configfile>
    </configfiles>
    <inputs>