Mercurial > repos > brinkmanlab > microbedb
comparison all_fasta.xml @ 5:67447b96c3ff draft
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/microbedb commit 5c194fba785b48181a68d413b2f70eaca23ff6db"
author | brinkmanlab |
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date | Mon, 09 Nov 2020 01:09:50 +0000 |
parents | 69186a3c9e76 |
children | 6ad04790da12 |
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4:69186a3c9e76 | 5:67447b96c3ff |
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14 <version_command>sqlite3 --version</version_command> | 14 <version_command>sqlite3 --version</version_command> |
15 <command><![CDATA[ | 15 <command><![CDATA[ |
16 #import os.path | 16 #import os.path |
17 sqlite3 -readonly $db '.param set :basepath ${os.path.dirname(str($db))}' '.read $__tool_directory__/all_fasta.sql' > '$output' | 17 sqlite3 -readonly $db '.param set :basepath ${os.path.dirname(str($db))}' '.read $__tool_directory__/all_fasta.sql' > '$output' |
18 #if $builds | 18 #if $builds |
19 && sqlite3 -readonly $db < '$builds_sql' | 19 && touch $__app__.config.builds_file_path && sqlite3 -readonly $db < '$builds_sql' |
20 #end if | 20 #end if |
21 ]]></command> | 21 ]]></command> |
22 <configfiles> | 22 <configfiles> |
23 <configfile name="builds_sql"><![CDATA[ | 23 <configfile name="builds_sql"><![CDATA[ |
24 #include $__tool_directory__+"/builds.sql" | 24 #include $__tool_directory__+"/builds.sql" |