comparison ParSNP.xml @ 3:2aeddc0a7b0e draft

planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/parsnp commit 90080c6d4e686ed46b3afb713f800e47596d9e53

2:22bf5b566ce2

    #unless $adv.aligner == "muscle"
        -n '$adv.aligner'
    #end unless

    ]]></command>
    <inputs>
        <!-- Inputs -->
        <param name="genomes" type="data" multiple="true" argument="-d" format="fasta" label="Genomes/Contigs/Scaffolds" />
        <conditional name="ref_or_gbk">
            <param name="ref_type" type="select" label="Reference type">

3:2aeddc0a7b0e

    #unless $adv.aligner == "muscle"
        -n '$adv.aligner'
    #end unless

    ]]></command>
    <stdio>
        <regex match="Parsnp requires 2 or more genomes to run, exiting" source="stderr" description="Parsnp requires 2 or more genomes to run"/>
    </stdio>
    <inputs>
        <!-- Inputs -->
        <param name="genomes" type="data" multiple="true" argument="-d" format="fasta" label="Genomes/Contigs/Scaffolds" />
        <conditional name="ref_or_gbk">
            <param name="ref_type" type="select" label="Reference type">