Mercurial > repos > brinkmanlab > parsnp
changeset 2:22bf5b566ce2 draft
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/parsnp commit a1f5a7f37fe4e85f7aca1a1476ab30468e1d1578"
| author | brinkmanlab |
|---|---|
| date | Fri, 13 Mar 2020 14:39:56 -0400 |
| parents | 2e855db9b19b |
| children | 2aeddc0a7b0e |
| files | ParSNP.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/ParSNP.xml Thu Mar 12 19:38:17 2020 -0400 +++ b/ParSNP.xml Fri Mar 13 14:39:56 2020 -0400 @@ -14,8 +14,8 @@ </requirements> <version_command><![CDATA[parsnp -V |& tail -n1]]></version_command> <command detect_errors="aggressive"><![CDATA[ - export MEMORY_LIMIT=`expr ${GALAXY_MEMORY_MB:-0} \* 1000`; - [[ $MEMORY_LIMIT -eq 0 ]] && export MEMORY_LIMIT=; + export MEMORY_LIMIT=`expr \${GALAXY_MEMORY_MB:-0} \\* 1000`; + [[ \$MEMORY_LIMIT -eq 0 ]] && export MEMORY_LIMIT=; export GENOME_DIR=\$(mktemp -d -p `pwd`) #for $genome in $genomes && ln -sf '$genome'