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planemo upload for repository http://172.20.124.12:3000/bvalot3/PythonScript commit 9676573ee48ce5343600ab45cd3ac1a6adddabe4
author | bvalot |
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date | Tue, 14 Jun 2022 08:15:55 +0000 |
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<tool id="fasta_filter_region_wrapper" name="Filter region" version="0.1"> <description></description> <requirements> <requirement type="package" version="1.78">biopython</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal" /> </stdio> <version_command>$__tool_directory__/fasta_filter_to_region.py -v</version_command> <command> $__tool_directory__/fasta_filter_to_region.py -o '$output' '$fasta' #for $reg in $regions.split(" ") '$reg' #end for </command> <inputs> <param name="fasta" type="data" format="fasta" label="Database to filter on fasta" help="FASTA format" /> <param name="regions" type="text" value="" optional="false" size="4X50" label="List of region to conserved in format accession:start-stop" help="Separated each regions by a space" /> </inputs> <outputs> <data name="output" format="fasta" label="${tool.name} on ${on_string}: fasta" /> </outputs> <tests> <test expect_num_outputs="1"> <param name="fasta" value="input.fasta" /> <param name="regions" value="NODE_1_length_344587_cov_27.773165:10-190" /> <output name="output" file="filter_region.fasta" ftype="fasta" /> </test> </tests> <help> **What it does** Filter a fasta file based on regions. **Examples** CP000822.1:458-1689 NODE_1_length_721117_cov_11.496472:14500-18320 **Citation et licences** This Galaxy tool is Copyright © 2018 `B. Valot` and is released under the `GPL3 license`. </help> <citations> </citations> </tool>