Mercurial > repos > cafletezbrant > kmersvm
comparison kmersvm/kmertopwm.xml @ 7:fd740d515502 draft default tip
Uploaded revised kmer-SVM to include modules from kmer-visual.
author | cafletezbrant |
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date | Sun, 16 Jun 2013 18:06:14 -0400 |
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6:1aea7c1a9ab1 | 7:fd740d515502 |
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1 <tool id="kmer2meme" name="Kmer To MEME"> | |
2 <description>Convert kmers to MEME format for motif finding by Tomtom</description> | |
3 <command interpreter="perl">kmer2meme.pl | |
4 $weights $N | |
5 </command> | |
6 | |
7 <inputs> | |
8 <param format="tabular" name="weights" type="data" label="Kmer Weights"/> | |
9 <param type="integer" name="N" value="10" label="Kmer Number"> | |
10 <validator type="in_range" message="Kmer number must be in range 1 - 50" min="1" max="50"/> | |
11 </param> | |
12 </inputs> | |
13 | |
14 <outputs> | |
15 <data format="txt" from_work_dir="kmer2meme.meme" name="MEME for Kmers" label="${tool.name} on ${on_string}: MEME"/> | |
16 </outputs> | |
17 | |
18 <help> | |
19 This is a utility function that creates PWMs in MEME format for use with Tomtom. | |
20 | |
21 'Kmer Weights' is the weight file generated by 'Train SVM'. | |
22 | |
23 'Kmer Number' is the number of most positive and most negative kmers to be processed. | |
24 </help> | |
25 </tool> |