Mercurial > repos > cafletezbrant > kmersvm

diff kmersvm/scripts/kmersvm_train.py @ 7:fd740d515502 draft default tip

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Uploaded revised kmer-SVM to include modules from kmer-visual.
author cafletezbrant
date Sun, 16 Jun 2013 18:06:14 -0400
parents 7fe1103032f7
children
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--- a/kmersvm/scripts/kmersvm_train.py	Mon Aug 20 21:42:29 2012 -0400
+++ b/kmersvm/scripts/kmersvm_train.py	Sun Jun 16 18:06:14 2013 -0400
@@ -754,7 +754,8 @@
 	sids = sids_pos + sids_neg
 
 	if options.weight == 0:
-		options.weight = 1 + log(nneg/npos)
+		#DEBUGGED by dlee 02/17/13
+		options.weight = 1 + log(nneg/float(npos))
 
 	if options.quiet == False:
 		sys.stderr.write('SVM parameters:\n')