Mercurial > repos > caleb-easterly > peca
diff peca.xml @ 11:19bb06146c2e draft
planemo upload for repository https://github.com/caleb-easterly/galaxytools/peca
author | caleb-easterly |
---|---|
date | Thu, 08 Mar 2018 18:27:44 -0500 |
parents | f0de83932f9e |
children | 5c3b60c36c66 |
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--- a/peca.xml Mon Mar 05 18:11:34 2018 -0500 +++ b/peca.xml Thu Mar 08 18:27:44 2018 -0500 @@ -9,17 +9,18 @@ ## write groups to file echo '$group1' > group1.txt && echo '$group2' > group2.txt && - Rscript --vanilla '$__tool_directory__/peca.R' '$input' group1.txt group2.txt '$test_type' '$output' + Rscript --vanilla '$__tool_directory__/peca.R' '$input' group1.txt group2.txt '$test_type' '$paired' '$output' ]]></command> <inputs> <param name="input" type="data" format="tabular"/> <param name="group1" type="data_column" data_ref="input" multiple="true"/> <param name="group2" type="data_column" data_ref="input" multiple="true"/> - <param name="test_type" type="select"> + <param name="test_type" type="select" label="Type of test"> <option value="t" selected="true">Standard t-test</option> <option value="modt">Modified t-test</option> <option value="rots">Reproducibility-optimized test statistic</option> </param> + <param name="paired" type="boolean" label="Perform paired t-test" checked="false"/> </inputs> <outputs> <data format="tabular" name="output"/> @@ -30,6 +31,7 @@ <param name="group1" value="2,3,4"/> <param name="group2" value="5,6,7"/> <param name="test_type" value="t"/> + <param name="paired" value="false"/> <output name="output" file="out.tab" ftype="tabular"/> </test> </tests>