Mercurial > repos > caleb-easterly > peca

diff peca.xml @ 2:36b7a5891000 draft

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planemo upload for repository https://github.com/caleb-easterly/galaxytools/peca
author caleb-easterly
date Thu, 22 Feb 2018 11:28:22 -0500
parents 34c1ae5e99ac
children 07bd2582526b
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--- a/peca.xml	Wed Feb 21 16:57:49 2018 -0500
+++ b/peca.xml	Thu Feb 22 11:28:22 2018 -0500
@@ -4,11 +4,10 @@
         <requirement type="package" version="0.7">r-dbi</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        ## write group 1 to file
+        ## write groups to file
         echo '$group1' > group1.txt &&
         echo '$group2' > group2.txt && 
-        cat group1.txt &&
-        Rscript --vanilla '$__tool_directory__/peca.R' '$input' '$group1' '$group2' '$output'
+        Rscript --vanilla '$__tool_directory__/peca.R' '$input' group1.txt group2.txt '$output'
     ]]></command>
     <inputs>
         <param name="input" type="data" format="tabular"/>