diff peca.xml @ 5:5a39fa8a235a draft

planemo upload for repository https://github.com/caleb-easterly/galaxytools/peca

--- a/peca.xml	Thu Feb 22 11:35:33 2018 -0500
+++ b/peca.xml	Thu Feb 22 11:45:43 2018 -0500
@@ -7,12 +7,17 @@
         ## write groups to file
         echo '$group1' > group1.txt &&
         echo '$group2' > group2.txt && 
-        Rscript --vanilla '$__tool_directory__/peca.R' '$input' group1.txt group2.txt '$output'
+        Rscript --vanilla '$__tool_directory__/peca.R' '$input' group1.txt group2.txt '$test_type' '$output'
     ]]></command>
     <inputs>
         <param name="input" type="data" format="tabular"/>
         <param name="group1" type="data_column" data_ref="input" multiple="true"/>
         <param name="group2" type="data_column" data_ref="input" multiple="true"/> 
+        <param name="test_type" type="select">
+            <option value="t" selected="true">Standard t-test</option>
+            <option value="modt">Modified t-test</option>
+            <option value="rots">Reproducibility-optimized test statistic</option>
+        <param>
     </inputs>
     <outputs>
         <data format="tabular" name="output"/>
@@ -22,6 +27,7 @@
             <param name="input" value="test.tab" ftype="tabular"/>
             <param name="group1" value="2,3,4"/>
             <param name="group2" value="5,6,7"/>
+            <param name="test_type" value="t"/>
             <output name="output" file="out.tab" ftype="tabular"/>
         </test>
     </tests>