Mercurial > repos > caleb-easterly > peca
view peca.xml @ 3:784c107c5861 draft
planemo upload for repository https://github.com/caleb-easterly/galaxytools/peca
author | caleb-easterly |
---|---|
date | Thu, 22 Feb 2018 11:33:37 -0500 |
parents | 36b7a5891000 |
children | 07bd2582526b |
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<tool id="peca" name="PECA: Probe-level expression change averaging" version="0.1.0"> <requirements> <requirement type="package" version="1.14.0">bioconductor-peca</requirement> <requirement type="package" version="0.7">r-dbi</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ ## write groups to file echo '$group1' > group1.txt && echo '$group2' > group2.txt && Rscript --vanilla '$__tool_directory__/peca.R' '$input' group1.txt group2.txt '$output' ]]></command> <inputs> <param name="input" type="data" format="tabular"/> <param name="group1" type="data_column" data_ref="input" multiple="true"/> <param name="group2" type="data_column" data_ref="input" multiple="true"/> </inputs> <outputs> <data format="tabular" name="output"/> </outputs> <tests> <test> <param name="input" value="test.tab" ftype="tabular"/> <param name="group1" value="2,3,4"/> <param name="group2" value="4,5,6"/> <output name="output" file="out.tab" ftype="tabular"/> </test> </tests> <help><![CDATA[ ]]></help> </tool>