Mercurial > repos > caleb-easterly > peca
changeset 6:e16cd77cf9f7 draft
planemo upload for repository https://github.com/caleb-easterly/galaxytools/peca
author | caleb-easterly |
---|---|
date | Mon, 26 Feb 2018 16:07:30 -0500 |
parents | 5a39fa8a235a |
children | 6ea067ed77ac |
files | peca.R peca.xml test.xml |
diffstat | 3 files changed, 20 insertions(+), 3 deletions(-) [+] |
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--- a/peca.R Thu Feb 22 11:45:43 2018 -0500 +++ b/peca.R Mon Feb 26 16:07:30 2018 -0500 @@ -36,7 +36,6 @@ results <- PECA_df(quant_file, group1_names, group2_names, - type=ttype, id = df_names[1]) # put add protein names column
--- a/peca.xml Thu Feb 22 11:45:43 2018 -0500 +++ b/peca.xml Mon Feb 26 16:07:30 2018 -0500 @@ -1,4 +1,5 @@ -<tool id="peca" name="PECA: Probe-level expression change averaging" version="0.1.0"> +<tool id="peca" name="PECA" version="0.1.0"> + <description>probe-level expression change averaging</description> <requirements> <requirement type="package" version="1.14.0">bioconductor-peca</requirement> <requirement type="package" version="0.7">r-dbi</requirement> @@ -17,7 +18,7 @@ <option value="t" selected="true">Standard t-test</option> <option value="modt">Modified t-test</option> <option value="rots">Reproducibility-optimized test statistic</option> - <param> + </param> </inputs> <outputs> <data format="tabular" name="output"/>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test.xml Mon Feb 26 16:07:30 2018 -0500 @@ -0,0 +1,17 @@ +<tool id="peca" name="PECA: Probe-level expression change averaging" version="0.1.0"> + <command detect_errors="exit_code"><![CDATA[ + ## write groups to file + echo '$group1' > group1.txt && + echo '$group2' > group2.txt + ]]></command> + <inputs> + <param name="input" type="data" format="tabular"/> + <param name="group1" type="data_column" data_ref="input" multiple="true"/> + <param name="group2" type="data_column" data_ref="input" multiple="true"/> + </inputs> + <outputs> + <data format="tabular" name="output"/> + </outputs> + <help><![CDATA[ + ]]></help> +</tool>