Mercurial > repos > caleb-easterly > validate_fasta_database
comparison validate_fasta_headers.xml @ 5:d4bd627618e5 draft
planemo upload commit ebb3b91b99aaf358d44432c9dc1f0a4d771970cd-dirty
| author | caleb-easterly |
|---|---|
| date | Wed, 28 Jun 2017 16:05:07 -0400 |
| parents | e5a59fabeeba |
| children |
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| 4:e5a59fabeeba | 5:d4bd627618e5 |
|---|---|
| 1 <tool id="validate_fasta_database" name="Validate FASTA Headers" version="0.1.1"> | 1 <tool id="validate_fasta_database" name="Validate FASTA Headers" version="0.1.2"> |
| 2 <requirements> | 2 <requirements> |
| 3 </requirements> | 3 </requirements> |
| 4 <stdio> | 4 <stdio> |
| 5 <exit_code range="1" level="fatal" description="Invalid FASTA headers detected, was asked to fail"/> | 5 <exit_code range="1" level="fatal" description="Invalid FASTA headers detected, was asked to fail"/> |
| 6 </stdio> | 6 </stdio> |
| 14 <inputs> | 14 <inputs> |
| 15 <param type="data" name="FASTA" format="fasta" label="Select input FASTA dataset"/> | 15 <param type="data" name="FASTA" format="fasta" label="Select input FASTA dataset"/> |
| 16 <param type="boolean" name="crashIfInvalid" label="Fail job if invalid FASTA headers detected?"/> | 16 <param type="boolean" name="crashIfInvalid" label="Fail job if invalid FASTA headers detected?"/> |
| 17 <param type="boolean" name="checkIsProtein" label="Ensure that sequence is not DNA or RNA?"/> | 17 <param type="boolean" name="checkIsProtein" label="Ensure that sequence is not DNA or RNA?"/> |
| 18 <conditional name="checkLength"> | 18 <conditional name="checkLength"> |
| 19 <param type="boolean" name="checkLength" label="Filter out sequences below a minimum length?"> | 19 <param type="boolean" name="checkLength" label="Filter out sequences below a minimum sequenceLength?"> |
| 20 <option value="true"></option> | 20 <option value="true"></option> |
| 21 <option value="false"></option> | 21 <option value="false"></option> |
| 22 </param> | 22 </param> |
| 23 <when value="true"> | 23 <when value="true"> |
| 24 <param name="minimumLength" type="integer" value="0" label="Minimum length that AA sequence must have"/> | 24 <param name="minimumLength" type="integer" value="0" label="Minimum sequenceLength that AA sequence must have"/> |
| 25 </when> | 25 </when> |
| 26 <when value="false"> | 26 <when value="false"> |
| 27 </when> | 27 </when> |
| 28 </conditional> | 28 </conditional> |
| 29 | 29 |