# HG changeset patch
# User caleb-easterly
# Date 1505401996 14400
# Node ID d7f67cc9a9e7bd844d08596218ba2d9722719451
# Parent ba8bbfd8933e9b796f5aaa081d3e1dde03c6ef9b
planemo upload commit ea998f84bf4eb1f6f6ece4eb7fc725920f9c78c4-dirty
diff -r ba8bbfd8933e -r d7f67cc9a9e7 validate_fasta_database-0.2.jar
Binary file validate_fasta_database-0.2.jar has changed
diff -r ba8bbfd8933e -r d7f67cc9a9e7 validate_fasta_database.xml
--- a/validate_fasta_database.xml Mon Jul 17 16:51:38 2017 -0400
+++ b/validate_fasta_database.xml Thu Sep 14 11:13:16 2017 -0400
@@ -1,11 +1,12 @@
-<tool id="validate_fasta_database" name="Validate FASTA Database" version="0.1.3">
+<tool id="validate_fasta_database" name="Validate FASTA Database" version="0.1.4">
<requirements>
+ <requirement type="package" version="1.0">validate-fasta-database</requirement>
</requirements>
<stdio>
<exit_code range="1" level="fatal" description="Invalid FASTA headers detected, was asked to fail"/>
</stdio>
<command detect_errors="exit_code"><![CDATA[
- java -jar $__tool_directory__/validate_fasta_database-0.2.jar
+ validate-fasta-database
'$inFasta'
'$goodFastaOut'
'$badFastaOut'
@@ -34,24 +35,10 @@
<param type="integer" name="minimumLength"
label="Minimum length for sequences to pass"
value="0"/>
-
-
- <!--<conditional name="checkLength">-->
- <!--<param type="boolean" name="checkLength" label="Filter out sequences below a minimum sequenceLength?">-->
- <!--<option value="true"></option>-->
- <!--<option value="false"></option>-->
- <!--</param>-->
- <!--<when value="true">-->
- <!--<param name="minimumLength" type="integer" value="0" label="Minimum sequenceLength that AA sequence must have"/>-->
- <!--</when>-->
- <!--<when value="false">-->
- <!--</when>-->
- <!--</conditional>-->
-
</inputs>
<outputs>
- <data name="goodFastaOut" format="fasta" label="Validate FASTA: Passed Sequences"/>
- <data name="badFastaOut" format="fasta" label="Validate FASTA: Failed Sequences"/>
+ <data name="goodFastaOut" format="fasta" label="Validate FASTA ${on_string}: passed"/>
+ <data name="badFastaOut" format="fasta" label="Validate FASTA ${on_string}: failed"/>
</outputs>
<tests>
<!-- test general filtering -->