Mercurial > repos > calkan > mrcanavar
view mrcanavar-0.34/prep.h @ 0:86522a0b5f59 default tip
Uploaded source code for mrCaNaVaR
author | calkan |
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date | Tue, 21 Feb 2012 10:44:13 -0500 |
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#ifndef __PREP #define __PREP #include <stdio.h> #include <stdlib.h> #include <string.h> #include <zlib.h> #include "globals.h" #include "utils.h" typedef struct gapcell{ char *chrom; int start; int end; }_gapcell; struct gapcell *gaptable; void prep_genome(void); int count_chrom(FILE *, int *); void read_ref(FILE *, int, int); void insert_chrom(int, char *, int, char *, int); void windowmaker(int, int, char *, char *, int, int); #endif