diff data_managers/data_manager_conf.xml @ 0:715bc9aeef69 draft

planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_managers/data_manager_conf.xml	Wed Feb 27 09:08:21 2019 -0500
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<data_managers>
+    <data_manager tool_file="data_manager_rgi_build_db/data_manager/rgi_database_builder.xml" id="rgi_database_builder" version="1.0.0">
+        <!-- Defines a Data Table to be modified -->
+        <data_table name="rgi_databases">
+            <!-- Handle the output of the Data Manager Tool -->
+            <output>
+                <!-- Columns that will be specified by the Data Manager Tool -->
+                <column name="value" /> 
+                <column name="name" />
+                <!-- The value of this column will be modified based upon data in "out_file" -->
+                <column name="path" output_ref="out_file" >
+                    <!-- Moving a file from the extra files path of "out_file" -->
+                    <move type="directory" relativize_symlinks="True">
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rgi_databases/${value}/${path}</target>
+                    </move>
+                    <!-- Store this value in the final Data Table -->
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rgi_databases/${value}/${path}</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>
+</data_managers>