diff data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml @ 0:715bc9aeef69 draft

planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml	Wed Feb 27 09:08:21 2019 -0500
@@ -0,0 +1,28 @@
+<?xml version="1.0"?>
+<tool id="rgi_database_builder" name="RGI Database Builder" tool_type="manage_data" version="1.0.0">
+    <description>Download and build the CARD database for RGI</description>
+    <requirements>
+	<requirement type="package" version="4.2.2">rgi</requirement>
+    </requirements>
+    <stdio>
+        <exit_code description="Error" level="fatal" range="1:" />
+    </stdio>
+    <command interpreter="python3">
+    <![CDATA[
+        rgi_database_builder.py --out "${out_file}"
+        #if $name:
+            --name "${name}"
+        #end if
+        #if $url:
+            --url "${url}"
+        #end if
+    ]]>
+    </command>
+    <inputs>
+        <param name="name" type="text" value="" label="Database name" help="Name for this database, or leave blank for today's date" optional="True"/>
+        <param name="url" type="text" value="https://card.mcmaster.ca/latest/data" label="Url" help="Url for the CARD data e.g https://card.mcmaster.ca/lastest/data. Visit https://card.mcmaster.ca/download to see previous CARD releases." optional="True"/>
+    </inputs>
+    <outputs>
+        <data format="data_manager_json" name="out_file" label="${tool.name} (JSON)"/>
+    </outputs>
+</tool>