Mercurial > repos > card > rgi
diff data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml @ 0:715bc9aeef69 draft
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
author | card |
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date | Wed, 27 Feb 2019 09:08:21 -0500 |
parents | |
children | f96cbb663aa9 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml Wed Feb 27 09:08:21 2019 -0500 @@ -0,0 +1,28 @@ +<?xml version="1.0"?> +<tool id="rgi_database_builder" name="RGI Database Builder" tool_type="manage_data" version="1.0.0"> + <description>Download and build the CARD database for RGI</description> + <requirements> + <requirement type="package" version="4.2.2">rgi</requirement> + </requirements> + <stdio> + <exit_code description="Error" level="fatal" range="1:" /> + </stdio> + <command interpreter="python3"> + <![CDATA[ + rgi_database_builder.py --out "${out_file}" + #if $name: + --name "${name}" + #end if + #if $url: + --url "${url}" + #end if + ]]> + </command> + <inputs> + <param name="name" type="text" value="" label="Database name" help="Name for this database, or leave blank for today's date" optional="True"/> + <param name="url" type="text" value="https://card.mcmaster.ca/latest/data" label="Url" help="Url for the CARD data e.g https://card.mcmaster.ca/lastest/data. Visit https://card.mcmaster.ca/download to see previous CARD releases." optional="True"/> + </inputs> + <outputs> + <data format="data_manager_json" name="out_file" label="${tool.name} (JSON)"/> + </outputs> +</tool>