# HG changeset patch
# User card
# Date 1661908488 0
# Node ID ce852ee2c3943669db9a7415c046d916aa903a93
# Parent  bfbfc24c5af290cf3bc6cd5dce0afbde0639bf1f
planemo upload for repository https://github.com/arpcard/rgi commit 78185f967f4c08824f0b118214adcecc14495f3e

diff -r bfbfc24c5af2 -r ce852ee2c394 data_managers/data_manager_conf.xml
--- a/data_managers/data_manager_conf.xml	Fri Nov 20 18:57:39 2020 +0000
+++ b/data_managers/data_manager_conf.xml	Wed Aug 31 01:14:48 2022 +0000
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <data_managers>
-    <data_manager tool_file="data_manager_rgi_build_db/data_manager/rgi_database_builder.xml" id="rgi_database_builder" version="1.1.0">
+    <data_manager tool_file="data_manager_rgi_build_db/data_manager/rgi_database_builder.xml" id="rgi_database_builder" version="1.2.0">
         <!-- Defines a Data Table to be modified -->
         <data_table name="rgi_databases">
             <!-- Handle the output of the Data Manager Tool -->
diff -r bfbfc24c5af2 -r ce852ee2c394 data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml
--- a/data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml	Fri Nov 20 18:57:39 2020 +0000
+++ b/data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml	Wed Aug 31 01:14:48 2022 +0000
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<tool id="rgi_database_builder" name="RGI Database Builder" tool_type="manage_data" version="1.1.0">
+<tool id="rgi_database_builder" name="RGI Database Builder" tool_type="manage_data" version="1.2.0">
     <description>Download and build the CARD database for RGI</description>
     <requirements>
-	<requirement type="package" version="5.1.1">rgi</requirement>
+	<requirement type="package" version="5.2.1">rgi</requirement>
     </requirements>
     <stdio>
         <exit_code description="Error" level="fatal" range="1:" />
diff -r bfbfc24c5af2 -r ce852ee2c394 rgi.xml
--- a/rgi.xml	Fri Nov 20 18:57:39 2020 +0000
+++ b/rgi.xml	Wed Aug 31 01:14:48 2022 +0000
@@ -1,12 +1,18 @@
-<tool id="rgi" name="Resistance Gene Identifier (RGI)" version="5.1.1">
+<tool id="rgi" name="Resistance Gene Identifier (RGI)" version="5.2.1">
     <description>This tool predicts resistome(s) from protein or nucleotide data based on homology and SNP models.</description>
     <requirements>
-        <requirement type="package" version="5.1.1">rgi</requirement>
+        <requirement type="package" version="5.2.1">rgi</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
     </stdio>
     <command detect_errors="aggressive"><![CDATA[
+#if $db_opts.db_opts_selector == "default":
+    export DB_PATH='${__tool_data_path__}/rgi_databases/_default' &&
+    export DATA_PATH="\$_GALAXY_JOB_TMP_DIR" &&
+    mkdir -p "\$DB_PATH" &&
+#end if
+
 #if $db_opts.db_opts_selector != "default":
     rgi load
         #if $db_opts.db_opts_selector == "local":