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author charles-bernard
date Thu, 21 Dec 2017 09:29:26 -0500
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31:7df7bee710ad 32:b26aec436ab5
5 - Visualization 5 - Visualization
6 description: A tool to Compute and display distribution of reads by genomic categories 6 description: A tool to Compute and display distribution of reads by genomic categories
7 long_description: | 7 long_description: |
8 ALFA provides a global overview of features distribution composing New Generation Sequencing dataset(s). 8 ALFA provides a global overview of features distribution composing New Generation Sequencing dataset(s).
9 Given a set of aligned reads (BAM files) and an annotation file (GTF format), the tool produces plots of the raw and normalized distributions of those reads among genomic categories (stop codon, 5'-UTR, CDS, intergenic, etc.) and biotypes (protein coding genes, miRNA, tRNA, etc.). Whatever the sequencing technique, whatever the organism. 9 Given a set of aligned reads (BAM files) and an annotation file (GTF format), the tool produces plots of the raw and normalized distributions of those reads among genomic categories (stop codon, 5'-UTR, CDS, intergenic, etc.) and biotypes (protein coding genes, miRNA, tRNA, etc.). Whatever the sequencing technique, whatever the organism.
10 https://github.com/biocompibens/ALFA.git 10 https://github.com/biocompibens/ALFA
11 name: alfa 11 name: alfa
12 owner: charles_bernard 12 owner: charles_bernard
13 remote_repository_url: https://github.com/charles-bernard/Galaxy_tools/tree/master/ALFA 13 remote_repository_url: https://github.com/biocompibens/ALFA/tree/master/Galaxy_toolshed_repositories/ALFA
14 type: unrestricted 14 type: unrestricted