Mercurial > repos > charles-bernard > alfa

changeset 6:36b2931bbd38 draft

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Uploaded
author charles-bernard
date Sat, 08 Oct 2016 16:47:54 -0400
parents b04bc2828ea8
children a1e1f50c6e73
files alfa/alfa/alfa/toolExample.xml
diffstat 1 files changed, 23 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/alfa/alfa/alfa/toolExample.xml	Sat Oct 08 16:47:54 2016 -0400
@@ -0,0 +1,23 @@
+<tool id="fa_gc_content_1" name="Compute GC content" version="0.1.0">
+  <description>for each sequence in a file</description>
+  <command interpreter="perl">toolExample.pl $input $output</command>
+  <inputs>
+    <param format="fasta" name="input" type="data" label="Source file"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="output" />
+  </outputs>
+
+  <tests>
+    <test>
+      <param name="input" value="fa_gc_content_input.fa"/>
+      <output name="out_file1" file="fa_gc_content_output.txt"/>
+    </test>
+  </tests>
+
+  <help>
+This tool computes GC content from a FASTA file.
+  </help>
+
+</tool>
+