Mercurial > repos > charles-bernard > data_manager_build_alfa_indexes
comparison data_manager_build_alfa_indexes/.shed.yml @ 27:4f70c9afd89d draft
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| author | charles-bernard |
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| date | Sat, 19 Nov 2016 04:24:46 -0500 |
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| 26:66e35b650256 | 27:4f70c9afd89d |
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| 1 categories: | |
| 2 - Data Managers | |
| 3 description: A tool to build ALFA indexes from automatically downloaded gtf annotation file | |
| 4 long_description: | | |
| 5 1. The tool asks the admin to enter a 'species_name' and automatically download the last release of the corresponding gtf annotation file on Ensembl. | |
| 6 2. The tool calls ALFA to generate the alfa indexes from this gtf file. | |
| 7 3. Resulting indexes are stored in the child directory 'alfa_indexes' of the dir <galaxy_data_manager_data_path> defined in config/galaxy.ini | |
| 8 4. Finally, the tool adds the new entry to the table 'alfa_indexes.loc'. This .loc file is where the data table 'alfa_indexes' points, as defined in config/shed_tool_data_table.conf.xml | |
| 9 5. At the end of the process, when a user will use alfa (https://toolshed.g2.bx.psu.edu/view/charles-bernard/alfa), the built-in indexes corresponding to the 'species_name' will be available | |
| 10 name: data_manager_build_alfa_indexes | |
| 11 owner: charles_bernard | |
| 12 remote_repository_url: https://github.com/charles-bernard/Galaxy_tools/tree/master/data_manager_build_alfa_indexes | |
| 13 type: unrestricted |