Mercurial > repos > charles-bernard > data_manager_build_alfa_indexes
comparison data_manager_build_alfa_indexes/data_manager/data_manager_build_alfa_indexes.xml @ 27:4f70c9afd89d draft
Uploaded
| author | charles-bernard |
|---|---|
| date | Sat, 19 Nov 2016 04:24:46 -0500 |
| parents | d28057236d24 |
| children |
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| 26:66e35b650256 | 27:4f70c9afd89d |
|---|---|
| 5 <requirement type="package" version="2.24">bedtools</requirement> | 5 <requirement type="package" version="2.24">bedtools</requirement> |
| 6 <requirement type="package" version="1.2">samtools</requirement> | 6 <requirement type="package" version="1.2">samtools</requirement> |
| 7 <requirement type="package" version="1.4">matplotlib</requirement> | 7 <requirement type="package" version="1.4">matplotlib</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 | 9 |
| 10 <command interpreter="python">data_manager_build_alfa_indexes.py -e "${reference_source['kingdom']}" "${reference_source['species_name']}" -o "${out_file}" $__tool_directory__</command> | 10 <command interpreter="python">data_manager_build_alfa_indexes.py -e "${reference_source['kingdom']}" "${reference_source['species_name']}" -o "${out_file}" "$__tool_directory__"</command> |
| 11 | 11 |
| 12 <inputs> | 12 <inputs> |
| 13 <conditional name="reference_source"> | 13 <conditional name="reference_source"> |
| 14 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome"> | 14 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome"> |
| 15 <option value="ensembl" selected="True">Ensembl Genomes Websites</option> | 15 <option value="ensembl" selected="True">Ensembl Genomes Websites</option> |