Mercurial > repos > charles-bernard > data_manager_build_alfa_indexes

comparison data_manager_build_alfa_indexes/data_manager/data_manager_build_alfa_indexes.py @ 25:5dafa8e43d3e draft

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Uploaded
author charles-bernard
date Tue, 01 Nov 2016 06:44:48 -0400
parents 424d6204a298
children 9139892d06a2
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24:424d6204a298 25:5dafa8e43d3e
67 67
68 def test_ensembl_species_exists(kingdom, url, species_name): 68 def test_ensembl_species_exists(kingdom, url, species_name):
69 print("____________________________________________________________") 69 print("____________________________________________________________")
70 print ("*** Testing whether %s is referenced in Ensembl %s" % (species_name, kingdom)) 70 print ("*** Testing whether %s is referenced in Ensembl %s" % (species_name, kingdom))
71 list_species_file_name = 'species_Ensembl%s%s.txt' % (kingdom[0].upper(), kingdom[1:]) 71 list_species_file_name = 'species_Ensembl%s%s.txt' % (kingdom[0].upper(), kingdom[1:])
72 print("%s" % kingdom)
73 if kingdom=='vertebrates': 72 if kingdom=='vertebrates':
74 download_file(url, list_species_file_name) 73 download_file(url, list_species_file_name)
75 else: 74 else:
76 download_file(url + list_species_file_name, list_species_file_name) 75 download_file(url + list_species_file_name, list_species_file_name)
77 76