Mercurial > repos > charles-bernard > data_manager_build_alfa_indexes
comparison data_manager_build_alfa_indexes/data_manager/data_manager_build_alfa_indexes.xml @ 5:6cfa38b014c1 draft
Uploaded
| author | charles-bernard |
|---|---|
| date | Thu, 27 Oct 2016 06:55:32 -0400 |
| parents | 6f0be85be8fb |
| children | 54c2c66e45a9 |
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| 4:6f0be85be8fb | 5:6cfa38b014c1 |
|---|---|
| 1 <tool id="build_alfa_indexes" name="ALFA indexes" version="0.0.1" tool_type="manage_data"> | 1 <tool id="build_alfa_indexes" name="ALFA indexes" version="0.0.1" tool_type="manage_data"> |
| 2 <description>build ALFA indexes from automatically downloaded gtf annotation file</description> | 2 <description>build ALFA indexes from automatically downloaded gtf annotation file</description> |
| 3 | |
| 4 <requirements> | |
| 5 <requirement type="package" version="0.1.0">alfa</requirement> | |
| 6 </requirements> | |
| 7 | 3 |
| 8 <command interpreter="python">data_manager_build_alfa_indexes.py -e "${reference_source['kingdom']}" "${reference_source['species_name']}" -o "${out_file}" $__root_dir__ $__tool_directory__</command> | 4 <command interpreter="python">data_manager_build_alfa_indexes.py -e "${reference_source['kingdom']}" "${reference_source['species_name']}" -o "${out_file}" $__root_dir__ $__tool_directory__</command> |
| 9 | 5 |
| 10 <inputs> | 6 <inputs> |
| 11 <conditional name="reference_source"> | 7 <conditional name="reference_source"> |