Mercurial > repos > charles-bernard > data_manager_build_alfa_indexes
comparison data_manager_build_alfa_indexes/data_manager/data_manager_build_alfa_indexes.xml @ 4:6f0be85be8fb draft
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| author | charles-bernard |
|---|---|
| date | Thu, 27 Oct 2016 06:49:58 -0400 |
| parents | 4ada30780811 |
| children | 6cfa38b014c1 |
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| 3:4ada30780811 | 4:6f0be85be8fb |
|---|---|
| 3 | 3 |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="0.1.0">alfa</requirement> | 5 <requirement type="package" version="0.1.0">alfa</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 | 7 |
| 8 <command interpreter="python">data_manager_build_alfa_indexes.py -e "${reference_source['kingdom']}" "${reference_source['species_name']}" -o "${out_file}" $__root_dir__ </command> | 8 <command interpreter="python">data_manager_build_alfa_indexes.py -e "${reference_source['kingdom']}" "${reference_source['species_name']}" -o "${out_file}" $__root_dir__ $__tool_directory__</command> |
| 9 | 9 |
| 10 <inputs> | 10 <inputs> |
| 11 <conditional name="reference_source"> | 11 <conditional name="reference_source"> |
| 12 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome"> | 12 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome"> |
| 13 <option value="ensembl" selected="True">Ensembl Genomes Websites</option> | 13 <option value="ensembl" selected="True">Ensembl Genomes Websites</option> |