Mercurial > repos > cheanney > dbannot

changeset 1:5af6f6e0a0da draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author cheanney
date Thu, 16 Jul 2015 09:17:56 -0400
parents 8129ff2290dd
children f29b264120f9
files dbAnnot.xml
diffstat 1 files changed, 39 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dbAnnot.xml	Thu Jul 16 09:17:56 2015 -0400
@@ -0,0 +1,39 @@
+<tool id="dbAnnot" name="dbAnnot" version="1.0">
+    <description>Database Annotation (dbAnnot) allows for easy annotations of biological identifiers. </description>
+    <command interpreter="/usr/bin/php">
+        dbAnnotRestClient.php inputValues='$inputValues' annotations='$annotations' taxonId='$taxon' fileType='$filetype' > $result
+    </command>
+    <inputs>
+        <param name="annotations" type="text" size="30" label="Enter annotation ID name(s)" />
+        <param name="inputValues" type="text" area="true" size="4x40" label="Paste input ID value(s)" />										<param name="taxon" size="30" type="text" label="Enter a taxon id (optional)" />
+        <param name="filetype" type="select" label="fileType options">
+        <option value="table">table</option>
+        <option value="xml">xml</option>
+        <option value="json">json</option>
+      </param>
+    </inputs>
+				
+    <outputs>
+        <data format="html" name="result" label="dbAnnot.results">
+        	<change_format>
+            		<when input="filetype" value="xml" format="xml" />
+        	</change_format>
+	</data>
+    </outputs>
+
+
+    <help>
+
+.. class:: infomark
+
+**What it does**
+
+Add instructions here.
+
+-----
+
+
+**Usage**
+dbAnnot.php inputValues='SP140' annotations='Genes,Pathways' fileType='table' TaxonId='9606' (optional)
+    </help>
+</tool>