Mercurial > repos > chemteam > acpype_amber2gromacs

annotate template_parmconv.j2 @ 1:5b4ae74b7f0b draft default tip

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"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit def3e8d4a983ab47ceedde678f585b54c79bb8d1"
author chemteam
date Thu, 27 Jan 2022 17:19:05 +0000
parents 79c856227ff1
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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1 # Template for parmconv in Galaxy
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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2 {% if fmt == 'AMBER' %}
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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3 parm {{ top_in }}
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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4 {% elif fmt == 'GROMACS' %}
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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5 gromber {{ top_in }} {{str_in}}
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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6 {% elif fmt == 'CHARMM' %}
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
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7 chamber {{ top_in }} {{str_in}}
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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8 {% else %}
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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9 parm {{ top_in }}
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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10 {% endif %}
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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11 strip {{ stripmask }}
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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12 summary
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
parents:
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13 outparm {{ prmtop_out }}
79c856227ff1 "planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f6acbf6f5875904c5b0c69445da0bf44932611c6"
chemteam
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14 quit