Mercurial > repos > chemteam > ambertools_acpype
annotate template_parmconv.j2 @ 4:f4230f116196 draft
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
author | chemteam |
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date | Tue, 07 Apr 2020 08:10:40 -0400 |
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children | c8cdde00b105 |
rev | line source |
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4
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
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changeset
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1 # Template for parmconv in Galaxy |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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2 {% if fmt == 'AMBER' %} |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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3 parm {{ top_in }} |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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4 {% elif fmt == 'GROMACS' %} |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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5 gromber {{ top_in }} {{gro_in}} |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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6 {% elif fmt == 'CHARMM' %} |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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7 chamber {{ top_in }} {{gro_in}} |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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8 {% else %} |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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9 parm {{ top_in }} |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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10 {% endif %} |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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11 strip {{ stripmask }} |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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12 summary |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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13 outparm {{ prmtop_out }} |
f4230f116196
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
chemteam
parents:
diff
changeset
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14 quit |