Mercurial > repos > chemteam > biomd_rmsd_clustering
comparison get_clusters.py @ 2:b9c46dbe9605 draft default tip
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f1c3c88c7395f2e84cbc533199406aadb79c5c07"
| author | chemteam |
|---|---|
| date | Fri, 13 Nov 2020 19:38:57 +0000 |
| parents | ee1f38eb220e |
| children |
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| 1:b001ebc8bf58 | 2:b9c46dbe9605 |
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| 21 | 21 |
| 22 def main(): | 22 def main(): |
| 23 parser = argparse.ArgumentParser() | 23 parser = argparse.ArgumentParser() |
| 24 parser.add_argument('--Z', required=True, | 24 parser.add_argument('--Z', required=True, |
| 25 help='File for cluster linkage array.') | 25 help='File for cluster linkage array.') |
| 26 parser.add_argument('--threshold', type=int, required=True, | 26 parser.add_argument('--threshold', type=float, required=True, |
| 27 help='Distance cutoff.') | 27 help='Distance cutoff.') |
| 28 parser.add_argument('--min-members', type=int, required=True, | 28 parser.add_argument('--min-members', type=int, required=True, |
| 29 help='Minimum number of members of the cluster.') | 29 help='Minimum number of members of the cluster.') |
| 30 parser.add_argument('--output', required=True, | 30 parser.add_argument('--output', required=True, |
| 31 help='Output file.') | 31 help='Output file.') |