comparison rmsd_clustering.py @ 3:9ca30ad95444 draft default tip

"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit f1c3c88c7395f2e84cbc533199406aadb79c5c07"

2:6f2029791c94

    plt.draw()
    plt.savefig(output, format='png')


def plot_dendrogram(Z, output):
    plt.figure(figsize=(25, 10))
    plt.title('Hierarchical Clustering Dendrogram')
    plt.xlabel('Trajectory index')
    plt.ylabel('distance')
    dendrogram(
        Z,

3:9ca30ad95444

    plt.draw()
    plt.savefig(output, format='png')


def plot_dendrogram(Z, output):
    # figure width scales with number of leaves
    plt.figure(figsize=(0.25 * Z.shape[0], 10))
    plt.title('Hierarchical Clustering Dendrogram')
    plt.xlabel('Trajectory index')
    plt.ylabel('distance')
    dendrogram(
        Z,