Mercurial > repos > chemteam > gmx_em

annotate test-data/check_compare_energy.txt @ 21:9660b2c5fdda draft

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planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
author chemteam
date Tue, 12 Jul 2022 12:50:40 +0000
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21
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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1 :-) GROMACS - gmx check, 2022-conda_forge (-:
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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2
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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3 Executable: /usr/local/bin.AVX2_256/gmx
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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4 Data prefix: /usr/local
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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5 Working dir: /tmp/tmpgswi37e1/job_working_directory/000/7/working
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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6 Command line:
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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7 gmx check -e ./ener1.edr -e2 ./ener2.edr -tol 0.1 -abstol 0.1 -lastener Pressure
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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8
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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9 Opened ./ener1.edr as single precision energy file
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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10 Opened ./ener2.edr as single precision energy file
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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11
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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12 Reading energy frame 0 time 0.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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13 Reading energy frame 0 time 0.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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14 Reading energy frame 1 time 1.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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15 Reading energy frame 1 time 0.100
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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16 Reading energy frame 2 time 2.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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17 Reading energy frame 2 time 0.200
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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18 Reading energy frame 3 time 3.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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19 Reading energy frame 3 time 0.300
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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20 Reading energy frame 4 time 4.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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21 Reading energy frame 4 time 0.400 comparing energy file ./ener1.edr and ./ener2.edr
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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22
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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23 There are 31 and 50 terms in the energy files
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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24
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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25 enm[0] (Bond - -)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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26 enm[30] (T-rest - -)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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27 enm[6] (- - Disper. corr.)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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28 enm[10] (- - Kinetic En.)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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29 enm[11] (- - Total Energy)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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30 enm[12] (- - Conserved En.)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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31 enm[13] (- - Temperature)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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32 enm[14] (- - Pres. DC)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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33 enm[16] (- - Constr. rmsd)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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34 enm[17] (- - Box-X)
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35 enm[18] (- - Box-Y)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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36 enm[19] (- - Box-Z)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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37 enm[20] (- - Volume)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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38 enm[21] (- - Density)
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39 enm[22] (- - pV)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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40 enm[23] (- - Enthalpy)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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41 enm[43] (- - Box-Vel-XX)
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42 enm[44] (- - Box-Vel-YY)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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43 enm[45] (- - Box-Vel-ZZ)
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44 enm[46] (- - T-Protein)
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45 enm[47] (- - T-non-Protein)
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46 enm[48] (- - Lamb-Protein)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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47 enm[49] (- - Lamb-non-Protein)
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48 There are 11 terms to compare in the energy files
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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49
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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50 Angle step 0: 659.741, step 0: 174.95
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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51 Proper Dih. step 0: 93.8665, step 0: 8.40722
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52 Ryckaert-Bell. step 0: 69.404, step 0: 91.4765
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53 Coulomb-14 step 0: 52.8221, step 0: 135.375
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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54 LJ (SR) step 0: -13.3421, step 0: -8.41078
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55 Coulomb (SR) step 0: -1790.86, step 0: -2038.4
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56 Coul. recip. step 0: 959.265, step 0: 615.944
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57 Potential step 0: 618.021, step 0: -875.856
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58 Pressure step 0: 901.187, step 0: 149.004
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59 Vir-XX step 0: -2075.14, step 0: -98.9118
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60 t (1.000000e+00 - 1.000000e-01)
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61 step (1 - 50)
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62 Angle step 1: 536.268, step 1: 188.647
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63 Proper Dih. step 1: 88.2, step 1: 17.982
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64 Ryckaert-Bell. step 1: 67.8373, step 1: 95.8567
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65 Coulomb-14 step 1: 49.6531, step 1: 108.883
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66 LJ (SR) step 1: -11.6246, step 1: 9.77759
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67 Coulomb (SR) step 1: -1784.23, step 1: -2034.55
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68 Coul. recip. step 1: 951.94, step 1: 546.933
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69 Potential step 1: 230.009, step 1: -937.817
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70 Pressure step 1: 893.094, step 1: 60.2446
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71 Vir-XX step 1: -1778.72, step 1: 128.956
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72 t (2.000000e+00 - 2.000000e-01)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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73 step (2 - 100)
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74 Angle step 2: 424.105, step 2: 176.128
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75 Proper Dih. step 2: 81.0497, step 2: 13.4277
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76 Ryckaert-Bell. step 2: 66.1758, step 2: 112.768
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77 Coulomb-14 step 2: 47.7305, step 2: 126.537
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78 LJ (SR) step 2: -0.367874, step 2: -9.48936
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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79 Coulomb (SR) step 2: -1780.95, step 2: -2085.56
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80 Coul. recip. step 2: 946.125, step 2: 455.54
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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81 Potential step 2: -14.5562, step 2: -1076.08
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82 Pressure step 2: 675.983, step 2: -57.99
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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diff changeset
83 Vir-XX step 2: -1371.69, step 2: 247.454
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
84 t (3.000000e+00 - 3.000000e-01)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
85 step (3 - 150)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
86 Angle step 3: 237.376, step 3: 205.981
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
87 Proper Dih. step 3: 68.1909, step 3: 18.2245
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
88 Ryckaert-Bell. step 3: 59.979, step 3: 147.317
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
89 Coulomb-14 step 3: 46.4965, step 3: 109.053
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
90 LJ (SR) step 3: -1.62034, step 3: 38.8948
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
91 Coulomb (SR) step 3: -1772, step 3: -2168.63
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
92 Coul. recip. step 3: 935.019, step 3: 399.011
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
93 Potential step 3: -223.77, step 3: -1128.1
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
94 Pressure step 3: 525.266, step 3: 37.3865
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
95 Vir-XX step 3: -964.61, step 3: 59.3395
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
96 t (4.000000e+00 - 4.000000e-01)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
97 step (4 - 200)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
98 Proper Dih. step 4: 59.4324, step 4: 17.8104
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
99 Ryckaert-Bell. step 4: 58.0578, step 4: 110.021
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
100 Coulomb-14 step 4: 48.4256, step 4: 105.922
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
101 LJ (SR) step 4: -5.24827, step 4: 17.1558
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
102 Coulomb (SR) step 4: -1769.41, step 4: -2150.06
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
103 Coul. recip. step 4: 932.888, step 4: 375.412
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
104 Potential step 4: -294.892, step 4: -1194.59
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
105 Pressure step 4: 242.456, step 4: 62.96
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
106 Vir-XX step 4: -736.257,
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
107 Reading energy frame 5 time 5.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
108 Reading energy frame 5 time 0.500
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
109 Reading energy frame 6 time 7.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
110 Reading energy frame 6 time 0.600
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
111 Reading energy frame 7 time 8.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
112 Reading energy frame 7 time 0.700
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
113 Reading energy frame 8 time 10.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
114 Reading energy frame 8 time 0.800
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
115 Reading energy frame 9 time 12.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
116 Reading energy frame 9 time 0.900
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
117 Reading energy frame 10 time 14.000
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
118 Reading energy frame 10 time 1.000 step 4: -3.54811
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
119 t (5.000000e+00 - 5.000000e-01)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
120 step (5 - 250)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
121 Angle step 5: 92.7917, step 5: 228.041
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
122 Proper Dih. step 5: 46.4461, step 5: 11.5992
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
123 Ryckaert-Bell. step 5: 53.249, step 5: 93.8753
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
124 Coulomb-14 step 5: 48.2479, step 5: 114.191
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
125 LJ (SR) step 5: -18.7401, step 5: 69.11
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
126 Coulomb (SR) step 5: -1763.71, step 5: -2209.02
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
127 Coul. recip. step 5: 923.209, step 5: 341.94
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
128 Potential step 5: -341.667, step 5: -1229.05
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
129 Pressure step 5: 356.299, step 5: 17.7417
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
130 Vir-XX step 5: -534.09, step 5: -113.967
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
131 t (7.000000e+00 - 6.000000e-01)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
132 step (7 - 300)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
133 Angle step 7: 130.86, step 7: 193.185
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
134 Proper Dih. step 7: 42.6816, step 7: 7.0615
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
135 Ryckaert-Bell. step 7: 53.3748, step 7: 106.945
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
136 Coulomb-14 step 7: 49.9217, step 7: 100.896
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
137 LJ (SR) step 7: -15.5538, step 7: 10.2121
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
138 Coulomb (SR) step 7: -1764.3, step 7: -2143.78
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
139 Coul. recip. step 7: 924.347, step 7: 311.339
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
140 Potential step 7: -444.809, step 7: -1304.87
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
141 Pressure step 7: 215.786, step 7: -61.3894
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
142 Vir-XX step 7: -589.888, step 7: 192.034
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
143 t (8.000000e+00 - 7.000000e-01)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
144 step (8 - 350)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
145 Angle step 8: 68.783, step 8: 187.181
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
146 Proper Dih. step 8: 30.5271, step 8: 10.9997
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
147 Ryckaert-Bell. step 8: 49.841, step 8: 123.72
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
148 Coulomb-14 step 8: 51.1761, step 8: 123.582
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
149 LJ (SR) step 8: -24.7767, step 8: 48.0457
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
150 Coulomb (SR) step 8: -1761.91, step 8: -2227.32
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
151 Coul. recip. step 8: 918.219, step 8: 267.376
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
152 Potential step 8: -447.838, step 8: -1356
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
153 Pressure step 8: 255.303, step 8: -36.2835
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
154 Vir-XX step 8: -410.784, step 8: 5.87002
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
155 t (1.000000e+01 - 8.000000e-01)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
156 step (10 - 400)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
157 Angle step 10: 90.876, step 10: 150.124
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
158 Proper Dih. step 10: 26.773, step 10: 15.4228
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
159 Ryckaert-Bell. step 10: 49.7648, step 10: 116.734
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
parents:
diff changeset
160 Coulomb-14 step 10: 52.0739, step 10: 120.921
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
161 LJ (SR) step 10: -24.2058, step 10: 61.3815
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
162 Coulomb (SR) step 10: -1762.32, step 10: -2208.19
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
163 Coul. recip. step 10: 918.133, step 10: 281.327
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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diff changeset
164 Potential step 10: -522.879, step 10: -1339
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
chemteam
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165 Pressure step 10: 177.827, step 10: 95.8529
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166 Vir-XX step 10: -466.151, step 10: 18.0131
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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167 t (1.200000e+01 - 9.000000e-01)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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168 step (12 - 450)
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169 Angle step 12: 71.9619, step 12: 218.415
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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170 Proper Dih. step 12: 20.7858, step 12: 6.46661
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171 Ryckaert-Bell. step 12: 48.0374, step 12: 118.772
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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172 LJ-14 step 12: 113.003, step 12: 125.421
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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173 Coulomb-14 step 12: 53.485, step 12: 111.128
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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174 LJ (SR) step 12: -27.637, step 12: 39.4093
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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175 Coulomb (SR) step 12: -1762.36, step 12: -2201.92
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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176 Coul. recip. step 12: 915.934, step 12: 272.022
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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177 Potential step 12: -542.18, step 12: -1310.71
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178 Pressure step 12: 180.996, step 12: -77.3705
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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179 Vir-XX step 12: -403.068, step 12: -3.89205
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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180 t (1.400000e+01 - 1.000000e+00)
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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181 step (14 - 500)
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182 Angle step 14: 77.708, step 14: 188.913
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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183 Proper Dih. step 14: 16.917, step 14: 13.1638
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184 Ryckaert-Bell. step 14: 47.5084, step 14: 116.045
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185 LJ-14 step 14: 112.831, step 14: 128.155
9660b2c5fdda planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit 8660ff51cd1a65b04f862562957592fe152fc81d
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186 Coulomb-14 step 14: 54.3835, step 14: 112.113
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187 LJ (SR) step 14: -29.3721, step 14: 18.6406
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188 Coulomb (SR) step 1
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189 Reading energy frame 11 time 15.000
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190 Last energy frame read 10 time 1.000
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191 GROMACS reminds you: "I do not believe continuum electrostatics" (Arieh Warshel, Nobel lecture 2013)
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192
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193 4: -1762.94, step 14: -2187.48
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194 Coul. recip. step 14: 914.559, step 14: 304.201
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195 Potential step 14: -557.441, step 14: -1306.67
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196 Pressure step 14: 144.996, step 14: -10.3104
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197 Vir-XX step 14: -396.739, step 14: 362.156
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198
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199 End of file on ./ener2.edr but not on ./ener1.edr