Mercurial > repos > chemteam > mdanalysis_ramachandran_plot

view test-data/test.yml @ 4:70a2d548e62c draft

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"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 1b23e024af45cc0999d9142d07de6897d4189ec2"
author chemteam
date Mon, 24 Aug 2020 16:23:14 -0400
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ramachandran1:
  phi:
    atom1:
     segid: HET
     resid: 3
     name: O5
    atom2:
     segid: HET
     resid: 3
     name: C1
    atom3:
     segid: HET
     resid: 2
     name: O4
    atom4:
     segid: HET
     resid: 2
     name: C4
  psi:
    atom1:
     segid: HET
     resid: 3
     name: C1
    atom2:
     segid: HET
     resid: 2
     name: O4
    atom3:
     segid: HET
     resid: 2
     name: C4
    atom4:
     segid: HET
     resid: 2
     name: C5
  comment: pick visually using VMD using labels. Go to labels, dihedral to see the information about resname resid and atomname and then lookup the segname for ach atom.