Mercurial > repos > chemteam > mmpbsa_mmgbsa
comparison test-data/ZAFF.prep @ 10:608098b3668d draft default tip
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit def3e8d4a983ab47ceedde678f585b54c79bb8d1"
author | chemteam |
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date | Thu, 27 Jan 2022 17:16:53 +0000 |
parents | |
children |
comparison
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9:12caa50c0d5f | 10:608098b3668d |
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1 1 1 2 | |
2 ZAFF_201108 set created by MTK++/MCPB | |
3 CYSTEINE with negative charge | |
4 | |
5 CY1 INT 1 | |
6 CORR OMIT DU BEG | |
7 0.00000 | |
8 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
9 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
10 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
11 4 N N M 3 2 1 1.335 116.600 180.000 -0.46300 | |
12 5 HN H E 4 3 2 1.010 119.800 0.000 0.25200 | |
13 6 CA CT M 4 3 2 1.449 121.900 180.000 0.03500 | |
14 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.04800 | |
15 8 CB CT 3 6 4 3 1.525 111.100 60.000 -0.54300 | |
16 9 HB3 H1 E 8 6 4 1.090 109.500 60.000 0.18377 | |
17 10 HB2 H1 E 8 6 4 1.090 109.500 300.000 0.18377 | |
18 11 SG S1 E 8 6 4 1.810 116.000 180.000 -0.43963 | |
19 12 C C M 6 4 3 1.522 111.100 180.000 0.61600 | |
20 13 O O E 12 6 4 1.229 120.500 0.000 -0.50400 | |
21 | |
22 IMPROPER | |
23 -M CA N HN | |
24 CA +M C O | |
25 | |
26 DONE | |
27 Zinc(II) Ion | |
28 | |
29 ZN1 INT 1 | |
30 CORR OMIT DU BEG | |
31 0.00000 | |
32 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
33 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
34 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
35 4 ZN ZN M 3 2 1 1.000 90.000 180.000 0.52437 | |
36 | |
37 DONE | |
38 CYSTEINE with negative charge | |
39 | |
40 CY2 INT 1 | |
41 CORR OMIT DU BEG | |
42 0.00000 | |
43 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
44 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
45 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
46 4 N N M 3 2 1 1.335 116.600 180.000 -0.46300 | |
47 5 HN H E 4 3 2 1.010 119.800 0.000 0.25200 | |
48 6 CA CT M 4 3 2 1.449 121.900 180.000 0.03500 | |
49 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.04800 | |
50 8 CB CT 3 6 4 3 1.525 111.100 60.000 -0.42561 | |
51 9 HB3 H1 E 8 6 4 1.090 109.500 60.000 0.17337 | |
52 10 HB2 H1 E 8 6 4 1.090 109.500 300.000 0.17337 | |
53 11 SG S2 E 8 6 4 1.810 116.000 180.000 -0.44155 | |
54 12 C C M 6 4 3 1.522 111.100 180.000 0.61600 | |
55 13 O O E 12 6 4 1.229 120.500 0.000 -0.50400 | |
56 | |
57 IMPROPER | |
58 -M CA N HN | |
59 CA +M C O | |
60 | |
61 DONE | |
62 HISTIDINE EPSILONH | |
63 | |
64 HE1 INT 1 | |
65 CORR OMIT DU BEG | |
66 0.00000 | |
67 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
68 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
69 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
70 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
71 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
72 6 CA CT M 4 3 2 1.449 121.900 180.000 -0.05810 | |
73 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.13600 | |
74 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.04092 | |
75 9 HB2 HC E 8 6 4 1.090 109.500 300.000 0.06506 | |
76 10 HB3 HC E 8 6 4 1.090 109.500 60.000 0.06506 | |
77 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.11300 | |
78 12 ND1 N1 S 11 8 6 1.390 122.000 180.000 -0.08206 | |
79 13 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.14656 | |
80 14 HE1 H5 E 13 12 11 1.090 120.000 180.000 0.19871 | |
81 15 NE2 NA B 13 12 11 1.310 109.000 0.000 -0.01782 | |
82 16 HE2 H E 15 13 12 1.010 125.000 180.000 0.27163 | |
83 17 CD2 CW S 15 13 12 1.360 110.000 0.000 -0.19685 | |
84 18 HD2 H4 E 17 15 13 1.090 120.000 180.000 0.12407 | |
85 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
86 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
87 | |
88 LOOP | |
89 CG CD2 | |
90 | |
91 IMPROPER | |
92 -M CA N H | |
93 CA +M C O | |
94 CE1 CD2 NE2 HE2 | |
95 CG NE2 CD2 HD2 | |
96 ND1 NE2 CE1 HE1 | |
97 ND1 CD2 CG CB | |
98 | |
99 DONE | |
100 Zinc(II) Ion | |
101 | |
102 ZN2 INT 1 | |
103 CORR OMIT DU BEG | |
104 0.00000 | |
105 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
106 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
107 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
108 4 ZN ZN M 3 2 1 1.000 90.000 180.000 0.43655 | |
109 | |
110 DONE | |
111 CYSTEINE with negative charge | |
112 | |
113 CY3 INT 1 | |
114 CORR OMIT DU BEG | |
115 0.00000 | |
116 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
117 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
118 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
119 4 N N M 3 2 1 1.335 116.600 180.000 -0.46300 | |
120 5 HN H E 4 3 2 1.010 119.800 0.000 0.25200 | |
121 6 CA CT M 4 3 2 1.449 121.900 180.000 0.03500 | |
122 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.04800 | |
123 8 CB CT 3 6 4 3 1.525 111.100 60.000 -0.54858 | |
124 9 HB3 H1 E 8 6 4 1.090 109.500 60.000 0.23928 | |
125 10 HB2 H1 E 8 6 4 1.090 109.500 300.000 0.23928 | |
126 11 SG S3 E 8 6 4 1.810 116.000 180.000 -0.57501 | |
127 12 C C M 6 4 3 1.522 111.100 180.000 0.61600 | |
128 13 O O E 12 6 4 1.229 120.500 0.000 -0.50400 | |
129 | |
130 IMPROPER | |
131 -M CA N HN | |
132 CA +M C O | |
133 | |
134 DONE | |
135 HISTIDINE DELTAH | |
136 | |
137 HD1 INT 1 | |
138 CORR OMIT DU BEG | |
139 0.00000 | |
140 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
141 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
142 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
143 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
144 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
145 6 CA CT M 4 3 2 1.449 121.900 180.000 0.01880 | |
146 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08810 | |
147 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.28625 | |
148 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.10029 | |
149 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.10029 | |
150 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.19057 | |
151 12 ND1 NA B 11 8 6 1.390 122.000 180.000 -0.04145 | |
152 13 HD1 H E 12 11 8 1.010 126.000 0.000 0.25478 | |
153 14 CE1 CR B 12 11 8 1.320 108.000 180.000 0.12120 | |
154 15 HE1 H5 E 14 12 11 1.090 120.000 180.000 0.07902 | |
155 16 NE2 N2 S 14 12 11 1.310 109.000 0.000 -0.53575 | |
156 17 CD2 CV S 16 14 12 1.360 110.000 0.000 0.20757 | |
157 18 HD2 H4 E 17 16 14 1.090 120.000 180.000 0.16660 | |
158 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
159 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
160 | |
161 LOOP | |
162 CG CD2 | |
163 | |
164 IMPROPER | |
165 -M CA N H | |
166 CA +M C O | |
167 CG CE1 ND1 HD1 | |
168 CG NE2 CD2 HD2 | |
169 ND1 NE2 CE1 HE1 | |
170 ND1 CD2 CG CB | |
171 | |
172 DONE | |
173 Zinc(II) Ion | |
174 | |
175 ZN3 INT 1 | |
176 CORR OMIT DU BEG | |
177 0.00000 | |
178 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
179 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
180 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
181 4 ZN ZN M 3 2 1 1.000 90.000 180.000 0.84354 | |
182 | |
183 DONE | |
184 CYSTEINE with negative charge | |
185 | |
186 CY4 INT 1 | |
187 CORR OMIT DU BEG | |
188 0.00000 | |
189 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
190 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
191 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
192 4 N N M 3 2 1 1.335 116.600 180.000 -0.46300 | |
193 5 HN H E 4 3 2 1.010 119.800 0.000 0.25200 | |
194 6 CA CT M 4 3 2 1.449 121.900 180.000 0.03500 | |
195 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.04800 | |
196 8 CB CT 3 6 4 3 1.525 111.100 60.000 -0.17661 | |
197 9 HB3 H1 E 8 6 4 1.090 109.500 60.000 0.13861 | |
198 10 HB2 H1 E 8 6 4 1.090 109.500 300.000 0.13861 | |
199 11 SG S4 E 8 6 4 1.810 116.000 180.000 -0.61293 | |
200 12 C C M 6 4 3 1.522 111.100 180.000 0.61600 | |
201 13 O O E 12 6 4 1.229 120.500 0.000 -0.50400 | |
202 | |
203 IMPROPER | |
204 -M CA N HN | |
205 CA +M C O | |
206 | |
207 DONE | |
208 HISTIDINE DELTAH | |
209 | |
210 HD2 INT 1 | |
211 CORR OMIT DU BEG | |
212 0.00000 | |
213 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
214 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
215 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
216 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
217 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
218 6 CA CT M 4 3 2 1.449 121.900 180.000 0.01880 | |
219 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08810 | |
220 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.02247 | |
221 9 HB2 HC E 8 6 4 1.090 109.500 300.000 0.03771 | |
222 10 HB3 HC E 8 6 4 1.090 109.500 60.000 0.03771 | |
223 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.05567 | |
224 12 ND1 NA B 11 8 6 1.390 122.000 180.000 -0.09621 | |
225 13 HD1 H E 12 11 8 1.010 126.000 0.000 0.31291 | |
226 14 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.10816 | |
227 15 HE1 H5 E 14 12 11 1.090 120.000 180.000 0.16876 | |
228 16 NE2 N3 S 14 12 11 1.310 109.000 0.000 -0.04270 | |
229 17 CD2 CV S 16 14 12 1.360 110.000 0.000 -0.10253 | |
230 18 HD2 H4 E 17 16 14 1.090 120.000 180.000 0.13565 | |
231 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
232 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
233 | |
234 LOOP | |
235 CG CD2 | |
236 | |
237 IMPROPER | |
238 -M CA N H | |
239 CA +M C O | |
240 CG CE1 ND1 HD1 | |
241 CG NE2 CD2 HD2 | |
242 ND1 NE2 CE1 HE1 | |
243 ND1 CD2 CG CB | |
244 | |
245 DONE | |
246 Zinc(II) Ion | |
247 | |
248 ZN4 INT 1 | |
249 CORR OMIT DU BEG | |
250 0.00000 | |
251 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
252 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
253 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
254 4 ZN ZN M 3 2 1 1.000 90.000 180.000 0.45174 | |
255 | |
256 DONE | |
257 CYSTEINE with negative charge | |
258 | |
259 CY5 INT 1 | |
260 CORR OMIT DU BEG | |
261 0.00000 | |
262 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
263 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
264 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
265 4 N N M 3 2 1 1.335 116.600 180.000 -0.46300 | |
266 5 HN H E 4 3 2 1.010 119.800 0.000 0.25200 | |
267 6 CA CT M 4 3 2 1.449 121.900 180.000 0.03500 | |
268 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.04800 | |
269 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.09333 | |
270 9 HB3 H1 E 8 6 4 1.090 109.500 60.000 0.02717 | |
271 10 HB2 H1 E 8 6 4 1.090 109.500 300.000 0.02717 | |
272 11 SG S5 E 8 6 4 1.810 116.000 180.000 -0.51567 | |
273 12 C C M 6 4 3 1.522 111.100 180.000 0.61600 | |
274 13 O O E 12 6 4 1.229 120.500 0.000 -0.50400 | |
275 | |
276 IMPROPER | |
277 -M CA N HN | |
278 CA +M C O | |
279 | |
280 DONE | |
281 HISTIDINE DELTAH | |
282 | |
283 HD3 INT 1 | |
284 CORR OMIT DU BEG | |
285 0.00000 | |
286 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
287 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
288 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
289 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
290 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
291 6 CA CT M 4 3 2 1.449 121.900 180.000 0.01880 | |
292 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08810 | |
293 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.19087 | |
294 9 HB2 HC E 8 6 4 1.090 109.500 300.000 0.02593 | |
295 10 HB3 HC E 8 6 4 1.090 109.500 60.000 0.02593 | |
296 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.23217 | |
297 12 ND1 NA B 11 8 6 1.390 122.000 180.000 -0.00378 | |
298 13 HD1 H E 12 11 8 1.010 126.000 0.000 0.27721 | |
299 14 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.07313 | |
300 15 HE1 H5 E 14 12 11 1.090 120.000 180.000 0.15761 | |
301 16 NE2 N4 S 14 12 11 1.310 109.000 0.000 -0.20593 | |
302 17 CD2 CV S 16 14 12 1.360 110.000 0.000 0.04659 | |
303 18 HD2 H4 E 17 16 14 1.090 120.000 180.000 0.10306 | |
304 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
305 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
306 | |
307 LOOP | |
308 CG CD2 | |
309 | |
310 IMPROPER | |
311 -M CA N H | |
312 CA +M C O | |
313 CG CE1 ND1 HD1 | |
314 CG NE2 CD2 HD2 | |
315 ND1 NE2 CE1 HE1 | |
316 ND1 CD2 CG CB | |
317 | |
318 DONE | |
319 Zinc(II) Ion | |
320 | |
321 ZN5 INT 1 | |
322 CORR OMIT DU BEG | |
323 0.00000 | |
324 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
325 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
326 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
327 4 ZN ZN M 3 2 1 1.000 90.000 180.000 0.46992 | |
328 | |
329 DONE | |
330 ASPARTIC ACID | |
331 | |
332 AP1 INT 1 | |
333 CORR OMIT DU BEG | |
334 0.00000 | |
335 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
336 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
337 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
338 4 N N M 3 2 1 1.335 116.600 180.000 -0.51630 | |
339 5 H H E 4 3 2 1.010 119.800 0.000 0.29360 | |
340 6 CA CT M 4 3 2 1.449 121.900 180.000 0.03810 | |
341 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08800 | |
342 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.24878 | |
343 9 HB2 HC E 8 6 4 1.090 109.500 300.000 0.00516 | |
344 10 HB3 HC E 8 6 4 1.090 109.500 60.000 0.00516 | |
345 11 CG C B 8 6 4 1.527 109.470 180.000 0.55272 | |
346 12 OD1 O2 E 11 8 6 1.260 117.200 90.000 -0.65184 | |
347 13 OD2 D1 E 11 8 6 1.260 117.200 270.000 -0.69157 | |
348 14 C C M 6 4 3 1.522 111.100 180.000 0.53660 | |
349 15 O O E 14 6 4 1.229 120.500 0.000 -0.58190 | |
350 | |
351 IMPROPER | |
352 -M CA N H | |
353 CA +M C O | |
354 CB OD1 CG OD2 | |
355 | |
356 DONE | |
357 HISTIDINE EPSILONH | |
358 | |
359 HE4 INT 1 | |
360 CORR OMIT DU BEG | |
361 0.00000 | |
362 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
363 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
364 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
365 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
366 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
367 6 CA CT M 4 3 2 1.449 121.900 180.000 -0.05810 | |
368 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.13600 | |
369 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.08504 | |
370 9 HB2 HC E 8 6 4 1.090 109.500 300.000 0.01528 | |
371 10 HB3 HC E 8 6 4 1.090 109.500 60.000 0.01528 | |
372 11 CG CC S 8 6 4 1.510 115.000 180.000 0.11815 | |
373 12 ND1 E1 S 11 8 6 1.390 122.000 180.000 -0.34192 | |
374 13 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.00828 | |
375 14 HE1 H5 E 13 12 11 1.090 120.000 180.000 0.14511 | |
376 15 NE2 NA B 13 12 11 1.310 109.000 0.000 -0.13423 | |
377 16 HE2 H E 15 13 12 1.010 125.000 180.000 0.31756 | |
378 17 CD2 CW S 15 13 12 1.360 110.000 0.000 -0.19050 | |
379 18 HD2 H4 E 17 15 13 1.090 120.000 180.000 0.16305 | |
380 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
381 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
382 | |
383 LOOP | |
384 CG CD2 | |
385 | |
386 IMPROPER | |
387 -M CA N H | |
388 CA +M C O | |
389 CE1 CD2 NE2 HE2 | |
390 CG NE2 CD2 HD2 | |
391 ND1 NE2 CE1 HE1 | |
392 ND1 CD2 CG CB | |
393 | |
394 DONE | |
395 Zinc(II) Ion | |
396 | |
397 ZN8 INT 1 | |
398 CORR OMIT DU BEG | |
399 0.00000 | |
400 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
401 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
402 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
403 4 ZN ZN M 3 2 1 1.000 90.000 180.000 1.05092 | |
404 | |
405 DONE | |
406 ASPARTIC ACID | |
407 | |
408 AP2 INT 1 | |
409 CORR OMIT DU BEG | |
410 0.00000 | |
411 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
412 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
413 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
414 4 N N M 3 2 1 1.335 116.600 180.000 -0.51630 | |
415 5 H H E 4 3 2 1.010 119.800 0.000 0.29360 | |
416 6 CA CT M 4 3 2 1.449 121.900 180.000 0.03810 | |
417 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08800 | |
418 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.33519 | |
419 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.07433 | |
420 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.07433 | |
421 11 CG C B 8 6 4 1.527 109.470 180.000 0.52189 | |
422 12 OD1 D2 E 11 8 6 1.260 117.200 90.000 -0.52163 | |
423 13 OD2 D2 E 11 8 6 1.260 117.200 270.000 -0.66205 | |
424 14 C C M 6 4 3 1.522 111.100 180.000 0.53660 | |
425 15 O O E 14 6 4 1.229 120.500 0.000 -0.58190 | |
426 | |
427 IMPROPER | |
428 -M CA N H | |
429 CA +M C O | |
430 CB OD1 CG OD2 | |
431 | |
432 DONE | |
433 HISTIDINE DELTAH | |
434 | |
435 HD8 INT 1 | |
436 CORR OMIT DU BEG | |
437 0.00000 | |
438 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
439 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
440 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
441 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
442 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
443 6 CA CT M 4 3 2 1.449 121.900 180.000 0.01880 | |
444 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08810 | |
445 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.16974 | |
446 9 HB2 HC E 8 6 4 1.090 109.500 300.000 0.01796 | |
447 10 HB3 HC E 8 6 4 1.090 109.500 60.000 0.01796 | |
448 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.05470 | |
449 12 ND1 NA B 11 8 6 1.390 122.000 180.000 -0.07381 | |
450 13 HD1 H E 12 11 8 1.010 126.000 0.000 0.28312 | |
451 14 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.09436 | |
452 15 HE1 H5 E 14 12 11 1.090 120.000 180.000 0.17880 | |
453 16 NE2 NQ S 14 12 11 1.310 109.000 0.000 -0.21845 | |
454 17 CD2 CV S 16 14 12 1.360 110.000 0.000 -0.14309 | |
455 18 HD2 H4 E 17 16 14 1.090 120.000 180.000 0.20161 | |
456 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
457 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
458 | |
459 LOOP | |
460 CG CD2 | |
461 | |
462 IMPROPER | |
463 -M CA N H | |
464 CA +M C O | |
465 CG CE1 ND1 HD1 | |
466 CG NE2 CD2 HD2 | |
467 ND1 NE2 CE1 HE1 | |
468 ND1 CD2 CG CB | |
469 | |
470 DONE | |
471 HISTIDINE DELTAH | |
472 | |
473 HD9 INT 1 | |
474 CORR OMIT DU BEG | |
475 0.00000 | |
476 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
477 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
478 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
479 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
480 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
481 6 CA CT M 4 3 2 1.449 121.900 180.000 0.01880 | |
482 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08810 | |
483 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.24934 | |
484 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.01611 | |
485 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.01611 | |
486 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.01350 | |
487 12 ND1 NA B 11 8 6 1.390 122.000 180.000 -0.23979 | |
488 13 HD1 H E 12 11 8 1.010 126.000 0.000 0.36104 | |
489 14 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.02222 | |
490 15 HE1 H5 E 14 12 11 1.090 120.000 180.000 0.18280 | |
491 16 NE2 NP S 14 12 11 1.310 109.000 0.000 -0.11848 | |
492 17 CD2 CV S 16 14 12 1.360 110.000 0.000 -0.13507 | |
493 18 HD2 H4 E 17 16 14 1.090 120.000 180.000 0.13944 | |
494 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
495 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
496 | |
497 LOOP | |
498 CG CD2 | |
499 | |
500 IMPROPER | |
501 -M CA N H | |
502 CA +M C O | |
503 CG CE1 ND1 HD1 | |
504 CG NE2 CD2 HD2 | |
505 ND1 NE2 CE1 HE1 | |
506 ND1 CD2 CG CB | |
507 | |
508 DONE | |
509 HISTIDINE EPSILONH | |
510 | |
511 HE5 INT 1 | |
512 CORR OMIT DU BEG | |
513 0.00000 | |
514 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
515 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
516 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
517 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
518 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
519 6 CA CT M 4 3 2 1.449 121.900 180.000 -0.05810 | |
520 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.13600 | |
521 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.46072 | |
522 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.09078 | |
523 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.09078 | |
524 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.10770 | |
525 12 ND1 E2 S 11 8 6 1.390 122.000 180.000 -0.06184 | |
526 13 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.11534 | |
527 14 HE1 H5 E 13 12 11 1.090 120.000 180.000 0.19061 | |
528 15 NE2 NA B 13 12 11 1.310 109.000 0.000 -0.03558 | |
529 16 HE2 H E 15 13 12 1.010 125.000 180.000 0.33152 | |
530 17 CD2 CW S 15 13 12 1.360 110.000 0.000 -0.19902 | |
531 18 HD2 H4 E 17 15 13 1.090 120.000 180.000 0.15190 | |
532 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
533 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
534 | |
535 LOOP | |
536 CG CD2 | |
537 | |
538 IMPROPER | |
539 -M CA N H | |
540 CA +M C O | |
541 CE1 CD2 NE2 HE2 | |
542 CG NE2 CD2 HD2 | |
543 ND1 NE2 CE1 HE1 | |
544 ND1 CD2 CG CB | |
545 | |
546 DONE | |
547 Zinc(II) Ion | |
548 | |
549 ZN9 INT 1 | |
550 CORR OMIT DU BEG | |
551 0.00000 | |
552 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
553 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
554 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
555 4 ZN ZN M 3 2 1 1.000 90.000 180.000 0.57880 | |
556 | |
557 DONE | |
558 HISTIDINE DELTAH | |
559 | |
560 HDD INT 1 | |
561 CORR OMIT DU BEG | |
562 0.00000 | |
563 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
564 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
565 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
566 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
567 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
568 6 CA CT M 4 3 2 1.449 121.900 180.000 0.01880 | |
569 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08810 | |
570 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.40554 | |
571 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.02653 | |
572 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.02653 | |
573 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.22905 | |
574 12 ND1 NA B 11 8 6 1.390 122.000 180.000 -0.08710 | |
575 13 HD1 H E 12 11 8 1.010 126.000 0.000 0.29391 | |
576 14 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.03989 | |
577 15 HE1 H5 E 14 12 11 1.090 120.000 180.000 0.17207 | |
578 16 NE2 NR S 14 12 11 1.310 109.000 0.000 -0.09616 | |
579 17 CD2 CV S 16 14 12 1.360 110.000 0.000 -0.09905 | |
580 18 HD2 H4 E 17 16 14 1.090 120.000 180.000 0.16357 | |
581 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
582 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
583 | |
584 LOOP | |
585 CG CD2 | |
586 | |
587 IMPROPER | |
588 -M CA N H | |
589 CA +M C O | |
590 CG CE1 ND1 HD1 | |
591 CG NE2 CD2 HD2 | |
592 ND1 NE2 CE1 HE1 | |
593 ND1 CD2 CG CB | |
594 | |
595 DONE | |
596 Zinc(II) Ion | |
597 | |
598 Z10 INT 1 | |
599 CORR OMIT DU BEG | |
600 0.00000 | |
601 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
602 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
603 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
604 4 ZN ZN M 3 2 1 1.000 90.000 180.000 0.30693 | |
605 | |
606 DONE | |
607 HISTIDINE DELTAH | |
608 | |
609 HD4 INT 1 | |
610 CORR OMIT DU BEG | |
611 0.00000 | |
612 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
613 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
614 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
615 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
616 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
617 6 CA CT M 4 3 2 1.449 121.900 180.000 0.01880 | |
618 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08810 | |
619 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.22851 | |
620 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.00852 | |
621 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.00852 | |
622 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.00477 | |
623 12 ND1 NA B 11 8 6 1.390 122.000 180.000 -0.03294 | |
624 13 HD1 H E 12 11 8 1.010 126.000 0.000 0.30707 | |
625 14 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.16957 | |
626 15 HE1 H5 E 14 12 11 1.090 120.000 180.000 0.19403 | |
627 16 NE2 N5 S 14 12 11 1.310 109.000 0.000 -0.13847 | |
628 17 CD2 CV S 16 14 12 1.360 110.000 0.000 -0.14780 | |
629 18 HD2 H4 E 17 16 14 1.090 120.000 180.000 0.10770 | |
630 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
631 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
632 | |
633 LOOP | |
634 CG CD2 | |
635 | |
636 IMPROPER | |
637 -M CA N H | |
638 CA +M C O | |
639 CG CE1 ND1 HD1 | |
640 CG NE2 CD2 HD2 | |
641 ND1 NE2 CE1 HE1 | |
642 ND1 CD2 CG CB | |
643 | |
644 DONE | |
645 HISTIDINE DELTAH | |
646 | |
647 HD5 INT 1 | |
648 CORR OMIT DU BEG | |
649 0.00000 | |
650 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
651 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
652 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
653 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
654 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
655 6 CA CT M 4 3 2 1.449 121.900 180.000 0.01880 | |
656 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08810 | |
657 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.68544 | |
658 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.11820 | |
659 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.11820 | |
660 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.27760 | |
661 12 ND1 NA B 11 8 6 1.390 122.000 180.000 -0.19557 | |
662 13 HD1 H E 12 11 8 1.010 126.000 0.000 0.33482 | |
663 14 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.01077 | |
664 15 HE1 H5 E 14 12 11 1.090 120.000 180.000 0.20873 | |
665 16 NE2 N6 S 14 12 11 1.310 109.000 0.000 -0.14199 | |
666 17 CD2 CV S 16 14 12 1.360 110.000 0.000 0.03137 | |
667 18 HD2 H4 E 17 16 14 1.090 120.000 180.000 0.04768 | |
668 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
669 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
670 | |
671 LOOP | |
672 CG CD2 | |
673 | |
674 IMPROPER | |
675 -M CA N H | |
676 CA +M C O | |
677 CG CE1 ND1 HD1 | |
678 CG NE2 CD2 HD2 | |
679 ND1 NE2 CE1 HE1 | |
680 ND1 CD2 CG CB | |
681 | |
682 DONE | |
683 HISTIDINE EPSILONH | |
684 | |
685 HE2 INT 1 | |
686 CORR OMIT DU BEG | |
687 0.00000 | |
688 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
689 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
690 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
691 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
692 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
693 6 CA CT M 4 3 2 1.449 121.900 180.000 -0.05810 | |
694 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.13600 | |
695 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.88299 | |
696 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.21629 | |
697 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.21629 | |
698 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.25909 | |
699 12 ND1 N7 S 11 8 6 1.390 122.000 180.000 -0.15265 | |
700 13 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.10122 | |
701 14 HE1 H5 E 13 12 11 1.090 120.000 180.000 0.15727 | |
702 15 NE2 NA B 13 12 11 1.310 109.000 0.000 -0.02146 | |
703 16 HE2 H E 15 13 12 1.010 125.000 180.000 0.33268 | |
704 17 CD2 CW S 15 13 12 1.360 110.000 0.000 -0.14773 | |
705 18 HD2 H4 E 17 15 13 1.090 120.000 180.000 0.15855 | |
706 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
707 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
708 | |
709 LOOP | |
710 CG CD2 | |
711 | |
712 IMPROPER | |
713 -M CA N H | |
714 CA +M C O | |
715 CE1 CD2 NE2 HE2 | |
716 CG NE2 CD2 HD2 | |
717 ND1 NE2 CE1 HE1 | |
718 ND1 CD2 CG CB | |
719 | |
720 DONE | |
721 WATER, TIP3P MODEL | |
722 | |
723 WT1 INT 1 | |
724 CORR OMIT DU BEG | |
725 0.00000 | |
726 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
727 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
728 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
729 4 H1 HW M 3 2 1 1.000 101.430 -98.890 0.47355 | |
730 5 O O1 M 4 3 2 0.957 104.520 -39.220 -0.77719 | |
731 6 H2 HW E 5 4 3 0.957 104.520 -151.000 0.47355 | |
732 | |
733 LOOP | |
734 H1 H2 | |
735 | |
736 DONE | |
737 Zinc(II) Ion | |
738 | |
739 ZN6 INT 1 | |
740 CORR OMIT DU BEG | |
741 0.00000 | |
742 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
743 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
744 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
745 4 ZN ZN M 3 2 1 1.000 90.000 180.000 0.69239 | |
746 | |
747 DONE | |
748 HISTIDINE DELTAH | |
749 | |
750 HD6 INT 1 | |
751 CORR OMIT DU BEG | |
752 0.00000 | |
753 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
754 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
755 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
756 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
757 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
758 6 CA CT M 4 3 2 1.449 121.900 180.000 0.01880 | |
759 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08810 | |
760 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.00991 | |
761 9 HB2 HC E 8 6 4 1.090 109.500 300.000 0.04604 | |
762 10 HB3 HC E 8 6 4 1.090 109.500 60.000 0.04604 | |
763 11 CG CC S 8 6 4 1.510 115.000 180.000 0.02346 | |
764 12 ND1 NA B 11 8 6 1.390 122.000 180.000 -0.05199 | |
765 13 HD1 H E 12 11 8 1.010 126.000 0.000 0.29344 | |
766 14 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.10727 | |
767 15 HE1 H5 E 14 12 11 1.090 120.000 180.000 0.19291 | |
768 16 NE2 N8 S 14 12 11 1.310 109.000 0.000 -0.23431 | |
769 17 CD2 CV S 16 14 12 1.360 110.000 0.000 -0.10958 | |
770 18 HD2 H4 E 17 16 14 1.090 120.000 180.000 0.13029 | |
771 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
772 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
773 | |
774 LOOP | |
775 CG CD2 | |
776 | |
777 IMPROPER | |
778 -M CA N H | |
779 CA +M C O | |
780 CG CE1 ND1 HD1 | |
781 CG NE2 CD2 HD2 | |
782 ND1 NE2 CE1 HE1 | |
783 ND1 CD2 CG CB | |
784 | |
785 DONE | |
786 HISTIDINE DELTAH | |
787 | |
788 HD7 INT 1 | |
789 CORR OMIT DU BEG | |
790 0.00000 | |
791 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
792 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
793 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
794 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
795 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
796 6 CA CT M 4 3 2 1.449 121.900 180.000 0.01880 | |
797 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08810 | |
798 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.41121 | |
799 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.05230 | |
800 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.05230 | |
801 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.22655 | |
802 12 ND1 NA B 11 8 6 1.390 122.000 180.000 -0.13679 | |
803 13 HD1 H E 12 11 8 1.010 126.000 0.000 0.30149 | |
804 14 CE1 CR B 12 11 8 1.320 108.000 180.000 0.03317 | |
805 15 HE1 H5 E 14 12 11 1.090 120.000 180.000 0.16396 | |
806 16 NE2 N9 S 14 12 11 1.310 109.000 0.000 -0.24026 | |
807 17 CD2 CV S 16 14 12 1.360 110.000 0.000 0.05443 | |
808 18 HD2 H4 E 17 16 14 1.090 120.000 180.000 0.04564 | |
809 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
810 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
811 | |
812 LOOP | |
813 CG CD2 | |
814 | |
815 IMPROPER | |
816 -M CA N H | |
817 CA +M C O | |
818 CG CE1 ND1 HD1 | |
819 CG NE2 CD2 HD2 | |
820 ND1 NE2 CE1 HE1 | |
821 ND1 CD2 CG CB | |
822 | |
823 DONE | |
824 HISTIDINE EPSILONH | |
825 | |
826 HE3 INT 1 | |
827 CORR OMIT DU BEG | |
828 0.00000 | |
829 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
830 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
831 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
832 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
833 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
834 6 CA CT M 4 3 2 1.449 121.900 180.000 -0.05810 | |
835 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.13600 | |
836 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.47187 | |
837 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.07714 | |
838 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.07714 | |
839 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.24053 | |
840 12 ND1 N0 S 11 8 6 1.390 122.000 180.000 0.04467 | |
841 13 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.08704 | |
842 14 HE1 H5 E 13 12 11 1.090 120.000 180.000 0.16785 | |
843 15 NE2 NA B 13 12 11 1.310 109.000 0.000 -0.13156 | |
844 16 HE2 H E 15 13 12 1.010 125.000 180.000 0.33211 | |
845 17 CD2 CW S 15 13 12 1.360 110.000 0.000 -0.11505 | |
846 18 HD2 H4 E 17 15 13 1.090 120.000 180.000 0.14818 | |
847 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
848 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
849 | |
850 LOOP | |
851 CG CD2 | |
852 | |
853 IMPROPER | |
854 -M CA N H | |
855 CA +M C O | |
856 CE1 CD2 NE2 HE2 | |
857 CG NE2 CD2 HD2 | |
858 ND1 NE2 CE1 HE1 | |
859 ND1 CD2 CG CB | |
860 | |
861 DONE | |
862 hydroxyl | |
863 | |
864 OH1 INT 1 | |
865 CORR OMIT DU BEG | |
866 0.00000 | |
867 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
868 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
869 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
870 4 O O2 M 3 2 1 1.540 111.208 180.000 -1.00476 | |
871 5 H1 HO E 4 3 2 0.947 97.223 90.000 0.41281 | |
872 | |
873 DONE | |
874 Zinc(II) Ion | |
875 | |
876 ZN7 INT 1 | |
877 CORR OMIT DU BEG | |
878 0.00000 | |
879 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
880 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
881 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
882 4 ZN ZN M 3 2 1 1.000 90.000 180.000 0.66660 | |
883 | |
884 DONE | |
885 HISTIDINE DELTAH | |
886 | |
887 HDA INT 1 | |
888 CORR OMIT DU BEG | |
889 0.00000 | |
890 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
891 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
892 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
893 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
894 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
895 6 CA CT M 4 3 2 1.449 121.900 180.000 0.01880 | |
896 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.08810 | |
897 8 CB CT 3 6 4 3 1.525 111.100 60.000 0.74837 | |
898 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.11954 | |
899 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.11954 | |
900 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.41256 | |
901 12 ND1 NA B 11 8 6 1.390 122.000 180.000 -0.12169 | |
902 13 HD1 H E 12 11 8 1.010 126.000 0.000 0.32152 | |
903 14 CE1 CR B 12 11 8 1.320 108.000 180.000 0.15077 | |
904 15 HE1 H5 E 14 12 11 1.090 120.000 180.000 0.16196 | |
905 16 NE2 NT S 14 12 11 1.310 109.000 0.000 -0.61460 | |
906 17 CD2 CV S 16 14 12 1.360 110.000 0.000 0.33532 | |
907 18 HD2 H4 E 17 16 14 1.090 120.000 180.000 0.01604 | |
908 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
909 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
910 | |
911 LOOP | |
912 CG CD2 | |
913 | |
914 IMPROPER | |
915 -M CA N H | |
916 CA +M C O | |
917 CG CE1 ND1 HD1 | |
918 CG NE2 CD2 HD2 | |
919 ND1 NE2 CE1 HE1 | |
920 ND1 CD2 CG CB | |
921 | |
922 DONE | |
923 WATER, TIP3P MODEL | |
924 | |
925 WT2 INT 1 | |
926 CORR OMIT DU BEG | |
927 0.00000 | |
928 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
929 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
930 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
931 4 H1 HW M 3 2 1 1.000 101.430 -98.890 0.44434 | |
932 5 O O3 M 4 3 2 0.957 104.520 -39.220 -0.78345 | |
933 6 H2 HW E 5 4 3 0.957 104.520 -151.000 0.44434 | |
934 | |
935 LOOP | |
936 H1 H2 | |
937 | |
938 DONE | |
939 Zinc(II) Ion | |
940 | |
941 Z11 INT 1 | |
942 CORR OMIT DU BEG | |
943 0.00000 | |
944 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
945 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
946 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
947 4 ZN ZN M 3 2 1 1.000 90.000 180.000 1.11246 | |
948 | |
949 DONE | |
950 HISTIDINE EPSILONH | |
951 | |
952 HE6 INT 1 | |
953 CORR OMIT DU BEG | |
954 0.00000 | |
955 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
956 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
957 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
958 4 N N M 3 2 1 1.335 116.600 180.000 -0.41570 | |
959 5 H H E 4 3 2 1.010 119.800 0.000 0.27190 | |
960 6 CA CT M 4 3 2 1.449 121.900 180.000 -0.05810 | |
961 7 HA H1 E 6 4 3 1.090 109.500 300.000 0.13600 | |
962 8 CB CT 3 6 4 3 1.525 111.100 60.000 1.05997 | |
963 9 HB2 HC E 8 6 4 1.090 109.500 300.000 -0.21528 | |
964 10 HB3 HC E 8 6 4 1.090 109.500 60.000 -0.21528 | |
965 11 CG CC S 8 6 4 1.510 115.000 180.000 -0.28845 | |
966 12 ND1 NY S 11 8 6 1.390 122.000 180.000 -0.49024 | |
967 13 CE1 CR B 12 11 8 1.320 108.000 180.000 -0.00101 | |
968 14 HE1 H5 E 13 12 11 1.090 120.000 180.000 0.15620 | |
969 15 NE2 NA B 13 12 11 1.310 109.000 0.000 -0.04727 | |
970 16 HE2 H E 15 13 12 1.010 125.000 180.000 0.34231 | |
971 17 CD2 CW S 15 13 12 1.360 110.000 0.000 -0.12203 | |
972 18 HD2 H4 E 17 15 13 1.090 120.000 180.000 0.26454 | |
973 19 C C M 6 4 3 1.522 111.100 180.000 0.59730 | |
974 20 O O E 19 6 4 1.229 120.500 0.000 -0.56790 | |
975 | |
976 LOOP | |
977 CG CD2 | |
978 | |
979 IMPROPER | |
980 -M CA N H | |
981 CA +M C O | |
982 CE1 CD2 NE2 HE2 | |
983 CG NE2 CD2 HD2 | |
984 ND1 NE2 CE1 HE1 | |
985 ND1 CD2 CG CB | |
986 | |
987 DONE | |
988 WATER, TIP3P MODEL | |
989 | |
990 WT3 INT 1 | |
991 CORR OMIT DU BEG | |
992 0.00000 | |
993 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
994 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
995 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
996 4 H1 HW M 3 2 1 1.000 101.430 -98.890 0.40063 | |
997 5 O O4 M 4 3 2 0.957 104.520 -39.220 -0.60020 | |
998 6 H2 HW E 5 4 3 0.957 104.520 -151.000 0.40063 | |
999 | |
1000 LOOP | |
1001 H1 H2 | |
1002 | |
1003 DONE | |
1004 Zinc(II) Ion | |
1005 | |
1006 Z12 INT 1 | |
1007 CORR OMIT DU BEG | |
1008 0.00000 | |
1009 1 DUMM DU M 0 -1 -2 0.000 .0 .0 .00000 | |
1010 2 DUMM DU M 1 0 -1 1.449 .0 .0 .00000 | |
1011 3 DUMM DU M 2 1 0 1.522 111.1 .0 .00000 | |
1012 4 ZN ZN M 3 2 1 1.000 90.000 180.000 0.98985 | |
1013 | |
1014 DONE | |
1015 STOP |