# Template for parmconv in Galaxy {% if fmt == 'AMBER' %} parm {{ top_in }} {% elif fmt == 'GROMACS' %} gromber {{ top_in }} {{str_in}} {% elif fmt == 'CHARMM' %} chamber {{ top_in }} {{str_in}} {% else %} parm {{ top_in }} {% endif %} strip {{ stripmask }} summary outparm {{ prmtop_out }} quit