Test Data Name Conventions

Concerning the naming of the execution parameters, input and output files, the following convention applies:

• The name starts with the tool specifier; see Tool Specifiers Table below.
• The clonotype definition specifier follows, if needed; see Clonotype Definition Specifiers Table below.
• The gene specifier (geneV or geneJ) follows, if needed.
• The cell type specifier (BCR or TCR) follows.
• The name ends with the file content specifier (input, output or parameters).

Tool Specifiers Table

Index	Tool	Specifier
1	Data Filtering	data_filter
2	Clonotype Diversity & Expression	clono_compute
3	Gene Usage	gene_usage
4	Public Clonotypes	public_clonos
5	Exclusive Clonotypes	exclusive_clonos
6	Gene Usage Comparison	gene_compare

Clonotype Definition Specifiers Table

Index	Clonotype Definition	Specifier
1	CDR3	def1
2	V+CDR3	def2
3	J+CDR3	def3
4	V+J+CDR3	def4
5	V+D+J+CDR3	def5