Mercurial > repos > chmaramis > irprofiler
comparison data_filtering.xml @ 1:acaa8e8a0b88 draft default tip
Uploaded test-data & added tool help
| author | chmaramis |
|---|---|
| date | Mon, 30 Apr 2018 04:47:52 -0400 |
| parents | 0e37e5b73273 |
| children |
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| 0:0e37e5b73273 | 1:acaa8e8a0b88 |
|---|---|
| 1 <tool id="dataFilter" name="Data Filtering" version="0.9"> | 1 <tool id="dataFilter" name="Data Filtering" version="1.0"> |
| 2 <description>Filter IMGT Summary dataset</description> | 2 <description>Filter IMGT Summary dataset</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.19">pandas</requirement> | 4 <requirement type="package" version="0.19">pandas</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command interpreter="python">data_filtering.py $input $TCR_or_BCR $Vfun $spChar $prod $delCF $threshold $Vg.Vgid $clen.cdr3len1 $cdp.cdr3part $filterin_file $filterout_file $summary_file $Jg.Jgid $Dg.Dgid $clen.cdr3len2 $process_id | 6 <command interpreter="python">data_filtering.py $input $TCR_or_BCR $Vfun $spChar $prod $delCF $threshold $Vg.Vgid $clen.cdr3len1 $cdp.cdr3part $filterin_file $filterout_file $summary_file $Jg.Jgid $Dg.Dgid $clen.cdr3len2 $process_id |
| 7 </command> | 7 </command> |
| 8 <inputs> | 8 <inputs> |
| 9 <param format="txt" name="input" type="data" label="IMGT Summary Output" /> | 9 <param format="txt" name="input" type="data" label="IMGT Summary Output" /> |
| 10 <param format="txt" name="process_id" type="text" label="Process ID" /> | 10 <param format="txt" name="process_id" type="text" label="Process ID" /> |