comparison public_clonotype_computation.xml @ 1:acaa8e8a0b88 draft default tip

Uploaded test-data & added tool help

0:0e37e5b73273

<tool id="pubClonoComput" name="Public Clonotypes" version="0.9">
    <description>Compute public clonotypes from multiple repertoires</description>
    <requirements>
      <requirement type="package" version="0.19">pandas</requirement>
    </requirements>
    <command interpreter="python">public_clonotype_computation.py "$clonotype" "$output_file" "$Th.thres"
#for x in $clono_files
  "$x.clfile"
  "$x.clfile.name"
#end for

    </inputs>
    <outputs>
        <data format="tabular" name="output_file" label="publicClonotypes" />
    </outputs>
    <help>
Coming soon
</help>
</tool>

1:acaa8e8a0b88

<tool id="pubClonoComput" name="Public Clonotypes" version="1.0">
    <description>Compute public clonotypes from multiple repertoires</description>
    <requirements>
      <requirement type="package" version="0.19">pandas</requirement>
		</requirements>
    <command interpreter="python">public_clonotype_computation.py "$clonotype" "$output_file" "$Th.thres"
#for x in $clono_files
  "$x.clfile"
  "$x.clfile.name"
#end for

    </inputs>
    <outputs>
        <data format="tabular" name="output_file" label="publicClonotypes" />
    </outputs>
    <help>
This tool extracts the public (i.e., shared in at least two datasets) clonotypes between 2 or more clonotype repertoires (1st output of the Clonotype Diversity &amp; Expression tool) according to 3 of the 5 supported clonotype definitions.
</help>
</tool>