diff gene_computation.xml @ 0:0e37e5b73273 draft

Initial commit

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gene_computation.xml	Fri Mar 30 07:22:29 2018 -0400
@@ -0,0 +1,22 @@
+<tool id="geneComput" name="Gene Usage" version="0.9">
+    <description>Compute gene usage from clonotype file</description>
+    <requirements>
+      <requirement type="package" version="0.19">pandas</requirement>
+    </requirements>
+    <command interpreter="python">gene_computation.py $input $gene $usage_file $top10_file $summary_file ${input.name}</command>
+    <inputs>
+        <param name="gene" type="select" label="Gene family">
+            <option value="V">V-Gene</option>
+            <option value="J">J-Gene</option>
+        </param>
+        <param format="tabular" name="input" type="data" label="Clonotype file" />
+    </inputs>
+    <outputs>
+        <data name="usage_file" format="tabular" label="${input.name}_geneUsageAll" />
+        <data name="top10_file" format="tabular" label="${input.name}_geneUsageTop10" />
+        <data name="summary_file" format="tabular" label="${input.name}_geneUsageSummary" />
+    </outputs>
+    <help>
+Coming soon
+  </help>
+</tool>