view gene_comparison.xml @ 1:acaa8e8a0b88 draft default tip

Uploaded test-data & added tool help

<tool id="geneCompar" name="Gene Usage Comparison" version="1.0">
<description>Compare gene usages from multiple repertoires</description>
<requirements>
      <requirement type="package" version="0.19">pandas</requirement>
</requirements>
<command interpreter="python">gene_comparison.py  "$output_file"
#for x in $rep_files
 "$x.rpfile"
 "$x.rpfile.name"
#end for
</command>
<inputs>
<repeat name="rep_files" title="Patient" min="2">
<param name="rpfile" type="data" label="File of gene usage repertoire" format="tabular"/>
</repeat>
</inputs>
<outputs>
<data format="tabular" name="output_file" label="geneUsageComparison"/>
</outputs>
<help>
This tool compares the usage of each gene of the V or J family in 2 or more clonotype repertoires; uses the 1st output of the Gene Usage tool.
</help>
</tool>